View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5823-Insertion-2 (Length: 822)

Name: NF5823-Insertion-2
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5823-Insertion-2
NF5823-Insertion-2
[»] chr3 (10 HSPs)
chr3 (237-822)||(39972725-39973342)
chr3 (9-195)||(39973384-39973570)
chr3 (462-571)||(4037125-4037234)
chr3 (467-571)||(49279473-49279577)
chr3 (467-588)||(11233473-11233594)
chr3 (462-585)||(39994161-39994284)
chr3 (492-573)||(10688590-10688671)
chr3 (462-500)||(39350780-39350818)
chr3 (508-569)||(782237-782298)
chr3 (491-574)||(50700000-50700078)
[»] scaffold0176 (1 HSPs)
scaffold0176 (462-596)||(15050-15184)
[»] chr7 (12 HSPs)
chr7 (462-596)||(34328066-34328198)
chr7 (462-562)||(46425315-46425415)
chr7 (472-571)||(16876724-16876823)
chr7 (472-571)||(23185910-23186009)
chr7 (462-560)||(18867925-18868023)
chr7 (491-554)||(2628463-2628526)
chr7 (492-548)||(27311802-27311858)
chr7 (492-594)||(9488798-9488900)
chr7 (519-568)||(32279347-32279396)
chr7 (492-555)||(42691097-42691160)
chr7 (492-555)||(42971671-42971734)
chr7 (479-544)||(48068390-48068455)
[»] chr1 (17 HSPs)
chr1 (462-593)||(48843338-48843469)
chr1 (462-571)||(27907687-27907796)
chr1 (462-571)||(27032297-27032406)
chr1 (467-591)||(51748516-51748640)
chr1 (492-554)||(48915013-48915075)
chr1 (492-554)||(48915203-48915265)
chr1 (492-554)||(48915404-48915466)
chr1 (493-590)||(19456339-19456436)
chr1 (493-586)||(50539757-50539850)
chr1 (492-555)||(19431418-19431481)
chr1 (492-573)||(24671138-24671219)
chr1 (515-595)||(26478522-26478602)
chr1 (492-572)||(46325618-46325698)
chr1 (508-553)||(5398066-5398111)
chr1 (31-66)||(46673675-46673710)
chr1 (491-556)||(7537010-7537075)
chr1 (492-572)||(46325398-46325476)
[»] chr6 (7 HSPs)
chr6 (462-571)||(9928245-9928354)
chr6 (462-571)||(22469683-22469792)
chr6 (462-571)||(7506616-7506725)
chr6 (467-571)||(31743844-31743946)
chr6 (491-547)||(6139326-6139382)
chr6 (492-542)||(9549379-9549429)
chr6 (492-546)||(28067321-28067375)
[»] chr8 (7 HSPs)
chr8 (467-565)||(33938595-33938693)
chr8 (468-583)||(16467571-16467686)
chr8 (468-571)||(16499813-16499920)
chr8 (492-554)||(4834998-4835060)
chr8 (468-571)||(16508738-16508841)
chr8 (492-556)||(12964329-12964393)
chr8 (492-542)||(44132901-44132951)
[»] chr2 (15 HSPs)
chr2 (462-575)||(15141860-15141973)
chr2 (478-562)||(3496792-3496876)
chr2 (462-546)||(19037044-19037128)
chr2 (492-569)||(11226132-11226209)
chr2 (492-571)||(23395917-23395996)
chr2 (492-596)||(41069701-41069805)
chr2 (521-571)||(39707457-39707507)
chr2 (509-595)||(31750424-31750510)
chr2 (492-569)||(6752102-6752179)
chr2 (492-547)||(32832621-32832676)
chr2 (507-542)||(34392353-34392388)
chr2 (492-573)||(36562768-36562849)
chr2 (494-554)||(1208617-1208677)
chr2 (492-554)||(39728987-39729049)
chr2 (507-556)||(14818707-14818756)
[»] chr5 (5 HSPs)
chr5 (467-571)||(37515565-37515669)
chr5 (462-559)||(37480280-37480375)
chr5 (462-554)||(2651623-2651717)
chr5 (507-555)||(21355259-21355307)
chr5 (492-547)||(19824592-19824647)
[»] chr4 (9 HSPs)
chr4 (467-548)||(9116237-9116318)
chr4 (492-554)||(46079368-46079430)
chr4 (492-589)||(29544190-29544289)
chr4 (496-573)||(52673230-52673307)
chr4 (491-553)||(53406516-53406578)
chr4 (492-556)||(47907278-47907342)
chr4 (492-542)||(50041842-50041892)
chr4 (492-542)||(50049064-50049114)
chr4 (491-528)||(5052115-5052152)


Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 237 - 822
Target Start/End: Complemental strand, 39973342 - 39972725
Alignment:
Q  237 aataaaggagaaaacatgcttttcacctgaaaaagta----------ctggtagaaattttgagcactaagatgtaatgataacatatgaaaaaagtgca 326  Q
    |||||||||||||||||||||||||||||||||||||          || ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  39973342 aataaaggagaaaacatgcttttcacctgaaaaagtattactgtgtacttgtataaattttgagcactaagatgtaatgataacatatgaaaaa-gtgca 39973244  T
Q  327 acaacttgctactaatagagttgctaataccgcggtaaaattgcttttacctcatagtattaagttacttcacaatcacgtaaatatatgtcacggaaat 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39973243 acaacttgctactaatagagttgctaataccgcggtaaaattgcttttacctcatagtattaagttacttcacaatcacgtaaatatatgtcacggaaat 39973144  T
Q  427 caggatgcttctaaaaaagcagggacaaag-gga------tgggtgccatag----------------gttcattttagatgaaagaaaatgattaaaat 503  Q
    |||||||||||||||||||||||||||||| |||      ||||||||||||                ||||||||||||||||||| ||||||||||||    
T  39973143 caggatgcttctaaaaaagcagggacaaaggggaaatacttgggtgccatagttttttggtgatataggttcattttagatgaaagagaatgattaaaat 39973044  T
Q  504 gatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaaaactaaggcacccaaatgctacctgggaca 603  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  39973043 aaattattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatggcatcaaaaaactaaggcacccaagtgctaccggggaca 39972944  T
Q  604 aagaggcgctaatttaaccgggaggaacaaaacttcctaggcataacagtttggtttggtttatgagaaaataaatctgaaccaatttgttcagcatttg 703  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39972943 aagaggcgctaatttaaccaggaggaacaaaacttcctaggcataacagtttggtttggtttatgagaaaataaatccgaaccaatttgttcagcatttg 39972844  T
Q  704 gaaaattaatcgcgaattcgattaatagcttttaacaatgattctttttatttctaacatgtcaaagaaaaaactgtatcatttggtttaggaaatagcc 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  39972843 gaaaattaatcgcgaattcgattaatagcttttaacaatgattctttttatttcaaacatgtcaaagaaaaaactgtatgatttggtttaggaaatagcc 39972744  T
Q  804 aaatattgttaacgagact 822  Q
    |||||||||||||||||||    
T  39972743 aaatattgttaacgagact 39972725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 39973570 - 39973384
Alignment:
Q  9 ggtcacatgactaagaaatgatatttggtcatatccaaccaaaacatgacacctcataaacatgtaactaagtgaaacttttacattaaaacaaaaatca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39973570 ggtcacatgactaagaaatgatatttggtcatatccaaccaaaacatgacacctcataaacatgtaactaagtgaaactttgacattaaaacaaaaatca 39973471  T
Q  109 aagagatctgtgaaaaaacattacaaagagaagagactggacgcttcccaccgaatgatggcaactgttcccatgatacaactttga 195  Q
    |||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39973470 aagaaatctgtgaaaaaacattagaaagagaagagactggatgcttcccaccgaatgatggcaactgttcccatgatacaactttga 39973384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 462 - 571
Target Start/End: Complemental strand, 4037234 - 4037125
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4037234 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacct 4037135  T
Q  562 atgacaccaa 571  Q
    ||| ||||||    
T  4037134 atggcaccaa 4037125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 467 - 571
Target Start/End: Complemental strand, 49279577 - 49279473
Alignment:
Q  467 cataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgac 566  Q
    |||| ||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49279577 cataagttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacctatgac 49279478  T
Q  567 accaa 571  Q
    |||||    
T  49279477 accaa 49279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 467 - 588
Target Start/End: Complemental strand, 11233594 - 11233473
Alignment:
Q  467 cataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgac 566  Q
    |||| ||| ||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11233594 cataagtttattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacctctgac 11233495  T
Q  567 accaaaaaactaaggcacccaa 588  Q
    || ||||||||| | |||||||    
T  11233494 acaaaaaaactatgacacccaa 11233473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 462 - 585
Target Start/End: Complemental strand, 39994284 - 39994161
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||| ||| ||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  39994284 ggtgacataagttaattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaaaagagagatagatacaaagttacct 39994185  T
Q  562 atgacaccaaaaaactaaggcacc 585  Q
    ||| ||||||||||||| ||||||    
T  39994184 atggcaccaaaaaactatggcacc 39994161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 492 - 573
Target Start/End: Complemental strand, 10688671 - 10688590
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaa 573  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  10688671 aatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaaggtaccaatggcaccaaaa 10688590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 39350780 - 39350818
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaa 500  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  39350780 ggtgccataggttcattttagatgaaagagaatgattaa 39350818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 569
Target Start/End: Complemental strand, 782298 - 782237
Alignment:
Q  508 tattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacacc 569  Q
    ||||||||||||||||||||  |||||| |||||||||||| ||||||| ||| ||| ||||    
T  782298 tattttgatgagagagaatgttttgttaggagagagatagagacaaagtcaccaatgtcacc 782237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 574
Target Start/End: Complemental strand, 50700078 - 50700000
Alignment:
Q  491 aaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaaa 574  Q
    ||||||||||||| | |||||| || |||||||||||   |||||||||||||||  |||||||  |||| |||||||||||||    
T  50700078 aaatgattaaaataaattatttagacgagagagaatg---tgttaagagagagat--acacaaatgtaccaatgacaccaaaaa 50700000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 462 - 596
Target Start/End: Complemental strand, 15184 - 15050
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15184 ggtgacatatgttcattttagatgaaagataatgattaaaataaattattttgatgagagagaatgagttgttaagatagagatagacacaaagttacct 15085  T
Q  562 atgacaccaaaaaactaaggcacccaaatgctacc 596  Q
    ||||||||||||||||| |||||||||||||||||    
T  15084 atgacaccaaaaaactatggcacccaaatgctacc 15050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 462 - 596
Target Start/End: Complemental strand, 34328198 - 34328066
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||  |||||||||||||||||| ||    
T  34328198 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaaga--gagatagacacaaagttatct 34328101  T
Q  562 atgacaccaaaaaactaaggcacccaaatgctacc 596  Q
    ||||||||||||||||| ||||||||| |||||||    
T  34328100 atgacaccaaaaaactatggcacccaagtgctacc 34328066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 462 - 562
Target Start/End: Original strand, 46425315 - 46425415
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46425315 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacct 46425414  T
Q  562 a 562  Q
    |    
T  46425415 a 46425415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 472 - 571
Target Start/End: Original strand, 16876724 - 16876823
Alignment:
Q  472 gttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaa 571  Q
    ||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16876724 gttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacctatggcaccaa 16876823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 472 - 571
Target Start/End: Original strand, 23185910 - 23186009
Alignment:
Q  472 gttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaa 571  Q
    ||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23185910 gttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacctatggcaccaa 23186009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 462 - 560
Target Start/End: Original strand, 18867925 - 18868023
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacc 560  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18867925 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacc 18868023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 2628463 - 2628526
Alignment:
Q  491 aaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    ||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||    
T  2628463 aaatgattaaaataaactatttagatgagagagaatgagttgttaagagagagatagacacaaa 2628526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 492 - 548
Target Start/End: Original strand, 27311802 - 27311858
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagataga 548  Q
    |||||||||||| ||||||||||||| |||||||| | | |||||||||||||||||    
T  27311802 aatgattaaaataatttattttgatgtgagagaattattagttaagagagagataga 27311858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 492 - 594
Target Start/End: Original strand, 9488798 - 9488900
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaaaactaaggcacccaaatg 591  Q
    |||||||||||| | |||||| ||  | || |||||||||||||||||||||||| |||||||| || | ||| ||||||||  | | ||||||||| ||    
T  9488798 aatgattaaaataaattatttagagaatagggaatgagttgttaagagagagatatacacaaaggtatcaatggcaccaaaagccaatggcacccaagtg 9488897  T
Q  592 cta 594  Q
    |||    
T  9488898 cta 9488900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 568
Target Start/End: Original strand, 32279347 - 32279396
Alignment:
Q  519 gagagaatgagttgttaagagagagatagacacaaagttacctatgacac 568  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||||||    
T  32279347 gagagagtgggttgttaagagagagatagacacaaagataccaatgacac 32279396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 555
Target Start/End: Original strand, 42691097 - 42691160
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaag 555  Q
    |||||||||||| | |||||||||||||||||||| | |  ||| |||||||||||| ||||||    
T  42691097 aatgattaaaataaattattttgatgagagagaattattaattaggagagagatagagacaaag 42691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 555
Target Start/End: Original strand, 42971671 - 42971734
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaag 555  Q
    |||||||||||| | |||||| |||||||||||||   | ||||||||||||||||| ||||||    
T  42971671 aatgattaaaataaattatttagatgagagagaattgatggttaagagagagatagaaacaaag 42971734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 544
Target Start/End: Original strand, 48068390 - 48068455
Alignment:
Q  479 ttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagaga 544  Q
    |||||||| |||| |||||||||||   |||||| ||||||||| ||| ||| |||||||||||||    
T  48068390 ttagatgagagaagatgattaaaatagattatttagatgagagataataagtggttaagagagaga 48068455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 462 - 593
Target Start/End: Complemental strand, 48843469 - 48843338
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  48843469 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgaattgttaagagagagatagatacaaagttacct 48843370  T
Q  562 atgacaccaaaaaactaaggcacccaaatgct 593  Q
    |||||| |||||||||| ||||||||| ||||    
T  48843369 atgacatcaaaaaactatggcacccaagtgct 48843338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 462 - 571
Target Start/End: Complemental strand, 27907796 - 27907687
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27907796 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacct 27907697  T
Q  562 atgacaccaa 571  Q
    ||||||||||    
T  27907696 atgacaccaa 27907687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 462 - 571
Target Start/End: Original strand, 27032297 - 27032406
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||| |||||||||| |||| ||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  27032297 ggtgacatatgttcattttatatgagagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttaccc 27032396  T
Q  562 atgacaccaa 571  Q
    ||||||||||    
T  27032397 atgacaccaa 27032406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 467 - 591
Target Start/End: Complemental strand, 51748640 - 51748516
Alignment:
Q  467 cataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgac 566  Q
    ||||| ||||||||| |||||||| |||||||||||| | |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| ||  |    
T  51748640 catagattcattttaaatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaaaagaaagatagacacaaagttaccaatagc 51748541  T
Q  567 accaaaaaactaaggcacccaaatg 591  Q
    | |||||||||| ||||||||||||    
T  51748540 atcaaaaaactatggcacccaaatg 51748516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 48915013 - 48915075
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48915013 aatgattaaaataaattattttgatgagagagaatgagttgttaagagagagatagacacaaa 48915075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 48915203 - 48915265
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48915203 aatgattaaaataaattattttgatgagagagaatgagttgttaagagagagatagacacaaa 48915265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 48915404 - 48915466
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48915404 aatgattaaaataaattattttgatgagagagaatgagttgttaagagagagatagacacaaa 48915466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 493 - 590
Target Start/End: Original strand, 19456339 - 19456436
Alignment:
Q  493 atgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaaaactaaggcacccaaat 590  Q
    ||||||||||| | |||||| ||||||||||||||| ||||||||| |||||||||||||||| | || |||||||||||||| || |||||| ||||    
T  19456339 atgattaaaataaattatttagatgagagagaatgaattgttaagaaagagatagacacaaaggtgccaatgacaccaaaaaattatggcaccaaaat 19456436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 493 - 586
Target Start/End: Original strand, 50539757 - 50539850
Alignment:
Q  493 atgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaaaactaaggcaccc 586  Q
    ||||||||||| | ||||||  || | |||||||||||||||||||||||||||||||||||| |  | || |||||||||||||| |||||||    
T  50539757 atgattaaaataaattatttaaataaaagagaatgagttgttaagagagagatagacacaaaggtgtcaataacaccaaaaaactatggcaccc 50539850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 492 - 555
Target Start/End: Original strand, 19431418 - 19431481
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaag 555  Q
    |||||||||||| | |||||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  19431418 aatgattaaaataaattatttagatgagagagaatgattggttaagagagatatagacacaaag 19431481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 492 - 573
Target Start/End: Complemental strand, 24671219 - 24671138
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaa 573  Q
    |||||||||||| | ||||||  |||||||||||||||| ||||||||| |||| || |||||| || | ||||||||||||    
T  24671219 aatgattaaaataaattatttaaatgagagagaatgagtggttaagagaaagatggaaacaaaggtatcaatgacaccaaaa 24671138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 26478602 - 26478522
Alignment:
Q  515 atgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaaaactaa-ggcacccaaatgctac 595  Q
    |||| ||| ||||| ||||||| ||| |||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  26478602 atgaaagataatgaattgttaaaagaaagatagacacaaaggtaccaatgacaccaaaaa-ctaatggcacccaaatgctac 26478522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 492 - 572
Target Start/End: Original strand, 46325618 - 46325698
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaa 572  Q
    |||||||||||| | |||||||||||||||||||||| |  ||| ||||||| |||| ||||||| ||| ||| |||||||    
T  46325618 aatgattaaaataagttattttgatgagagagaatgattgattatgagagagttagagacaaagtcaccaatgtcaccaaa 46325698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 553
Target Start/End: Original strand, 5398066 - 5398111
Alignment:
Q  508 tattttgatgagagagaatgagttgttaagagagagatagacacaa 553  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  5398066 tatttagatgagagagaatgagtggttaagagagagatagagacaa 5398111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 46673710 - 46673675
Alignment:
Q  31 atttggtcatatccaaccaaaacatgacacctcata 66  Q
    ||||||||| ||||||||||||||||||||||||||    
T  46673710 atttggtcacatccaaccaaaacatgacacctcata 46673675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 7537010 - 7537075
Alignment:
Q  491 aaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagt 556  Q
    ||||||||||||| | |||||||||| | ||||| ||| | |||| |||||||||||| |||||||    
T  7537010 aaatgattaaaataaattattttgataaaagagagtgattggttaggagagagatagagacaaagt 7537075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 572
Target Start/End: Complemental strand, 46325476 - 46325398
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaa 572  Q
    |||||||||||| | ||||||||||||  |||||||| |  ||| |||||||||||| ||||||| ||| ||| |||||||    
T  46325476 aatgattaaaataaattattttgatga--gagaatgattgattatgagagagatagagacaaagtcaccaatgtcaccaaa 46325398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 462 - 571
Target Start/End: Complemental strand, 9928354 - 9928245
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9928354 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacct 9928255  T
Q  562 atgacaccaa 571  Q
    ||| ||||||    
T  9928254 atggcaccaa 9928245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 462 - 571
Target Start/End: Complemental strand, 22469792 - 22469683
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22469792 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagaaagagatagacacaaagttacct 22469693  T
Q  562 atgacaccaa 571  Q
    ||| ||||||    
T  22469692 atggcaccaa 22469683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 462 - 571
Target Start/End: Complemental strand, 7506725 - 7506616
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    ||||||||| ||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||| | | ||||||||||    
T  7506725 ggtgccatatgttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataaatataaagttacct 7506626  T
Q  562 atgacaccaa 571  Q
    ||| ||||||    
T  7506625 atggcaccaa 7506616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 571
Target Start/End: Complemental strand, 31743946 - 31743844
Alignment:
Q  467 cataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgac 566  Q
    |||| ||||||||||||||||||| |||||||||||| | |||||| |||  |||||||| ||||||||| |||||||||||||||||  || |||||||    
T  31743946 cataagttcattttagatgaaagagaatgattaaaataaattatttagat--gagagaataagttgttaaaagagagatagacacaaaactatctatgac 31743849  T
Q  567 accaa 571  Q
    |||||    
T  31743848 accaa 31743844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 547
Target Start/End: Complemental strand, 6139382 - 6139326
Alignment:
Q  491 aaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatag 547  Q
    ||||||||||||| | |||||| ||||||||||||||| | ||||| ||||||||||    
T  6139382 aaatgattaaaataaattatttagatgagagagaatgaatggttaaaagagagatag 6139326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 542
Target Start/End: Complemental strand, 9549429 - 9549379
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagaga 542  Q
    |||||||||||| | ||||||  || |||||||||||||||||||||||||    
T  9549429 aatgattaaaataaattatttaaattagagagaatgagttgttaagagaga 9549379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 546
Target Start/End: Complemental strand, 28067375 - 28067321
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagata 546  Q
    |||||||||||| | |||||||||||||||||||||| | ||||  |||||||||    
T  28067375 aatgattaaaataaattattttgatgagagagaatgattggttagaagagagata 28067321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 467 - 565
Target Start/End: Original strand, 33938595 - 33938693
Alignment:
Q  467 cataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatga 565  Q
    |||||||||||||||||| ||||| |||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33938595 cataggttcattttagataaaagataatgattaaaataaattatttagatgagagagaatgaattgttaagagagagatagacacaaagttacctatga 33938693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 468 - 583
Target Start/End: Complemental strand, 16467686 - 16467571
Alignment:
Q  468 ataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgaca 567  Q
    |||||||||||||| |||||||| |||||||||| | | |||||| ||||||||||||| | || |||||||||||||| ||||||||||| ||||||||    
T  16467686 ataggttcattttatatgaaagagaatgattaaactaaattatttagatgagagagaataaattattaagagagagataaacacaaagttatctatgaca 16467587  T
Q  568 ccaaaaaactaaggca 583  Q
    ||||||||||| ||||    
T  16467586 ccaaaaaactatggca 16467571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 468 - 571
Target Start/End: Original strand, 16499813 - 16499920
Alignment:
Q  468 ataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagaga----atgagttgttaagagagagatagacacaaagttacctat 563  Q
    |||||||||||||| |||| ||| |||||||||| | | |||||| |||||||||||    || |||| |||||||||||||| ||||||||||| ||||    
T  16499813 ataggttcattttatatgagagagaatgattaaactaaattatttagatgagagagagagaataagttattaagagagagataaacacaaagttatctat 16499912  T
Q  564 gacaccaa 571  Q
    | ||||||    
T  16499913 ggcaccaa 16499920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 4834998 - 4835060
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    |||||||||||| | |||||| | ||| ||||||||||||||||||||| |||||||||||||    
T  4834998 aatgattaaaataaattatttaggtgaaagagaatgagttgttaagagaaagatagacacaaa 4835060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 468 - 571
Target Start/End: Original strand, 16508738 - 16508841
Alignment:
Q  468 ataggttcattttagatgaaagaaaatgattaaaatgatttattttgat--gagagagaatgagttgttaagagagagatagacacaaagttacctatga 565  Q
    |||||||||||||| |||| ||| |||||||||| | | |||||| |||  |||||||||| |||| |||  ||||||||| ||||||||||| |||||     
T  16508738 ataggttcattttatatgagagagaatgattaaactaaattatttagatgagagagagaataagttatta--agagagataaacacaaagttatctatgg 16508835  T
Q  566 caccaa 571  Q
    ||||||    
T  16508836 caccaa 16508841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 492 - 556
Target Start/End: Complemental strand, 12964393 - 12964329
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagt 556  Q
    |||||||||||| | |||||||||||| ||||||||| |  |||| ||||| |||||||||||||    
T  12964393 aatgattaaaataaattattttgatgaaagagaatgattgattaaaagagaaatagacacaaagt 12964329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 542
Target Start/End: Original strand, 44132901 - 44132951
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagaga 542  Q
    |||||||||||| | |||||||||||||||||||| | | |||||||||||    
T  44132901 aatgattaaaataaattattttgatgagagagaattattggttaagagaga 44132951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 462 - 575
Target Start/End: Complemental strand, 15141973 - 15141860
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacct 561  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||    
T  15141973 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaataagttgttaaaagagagatagacacaaagttatct 15141874  T
Q  562 atgacaccaaaaaa 575  Q
    |||  |||||||||    
T  15141873 atggtaccaaaaaa 15141860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 3496792 - 3496876
Alignment:
Q  478 tttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttaccta 562  Q
    ||||||||| ||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3496792 tttagatgagagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttaccta 3496876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 462 - 546
Target Start/End: Original strand, 19037044 - 19037128
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagata 546  Q
    |||| |||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  19037044 ggtgacataggttcattttagatgaaagagaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagata 19037128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 11226209 - 11226132
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacacc 569  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  11226209 aatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaaggtaccaatggcacc 11226132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 492 - 571
Target Start/End: Complemental strand, 23395996 - 23395917
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaa 571  Q
    |||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  23395996 aatgattaaaataaattatttagatgatagagaatgagttgttaagagagagatagacacaaatgtaccaatgacaccaa 23395917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 492 - 596
Target Start/End: Original strand, 41069701 - 41069805
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaaaactaaggcacccaaatg 591  Q
    |||||||||||| | |||||| ||||||||||||||| ||||||||||| |||||||||||||  || | || |||  ||||||||| ||||||||| ||    
T  41069701 aatgattaaaataaattatttagatgagagagaatgaattgttaagagacagatagacacaaatgtatcaataacattaaaaaactacggcacccaagtg 41069800  T
Q  592 ctacc 596  Q
    |||||    
T  41069801 ctacc 41069805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 521 - 571
Target Start/End: Original strand, 39707457 - 39707507
Alignment:
Q  521 gagaatgagttgttaagagagagatagacacaaagttacctatgacaccaa 571  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39707457 gagaatgagttgttaagagagagatagacacaaagttacctatggcaccaa 39707507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 595
Target Start/End: Complemental strand, 31750510 - 31750424
Alignment:
Q  509 attttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaaaactaaggcacccaaatgctac 595  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||||| || | ||| ||||||||  | | ||||||||| ||||||    
T  31750510 atttagatgagagaaaatgaattgttaagagagagatagacacaaaggtatcaatggcaccaaaagccaatggcacccaagtgctac 31750424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 6752102 - 6752179
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacacc 569  Q
    |||||||||||| | |||||| ||||||||| | | ||||||||||||||||||||||||| || || | ||||||||    
T  6752102 aatgattaaaataaattatttagatgagagaaagtaagttgttaagagagagatagacacagaggtatcaatgacacc 6752179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 492 - 547
Target Start/End: Original strand, 32832621 - 32832676
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatag 547  Q
    |||||||||||| | |||||| ||||||||||||||| | ||||||||||||||||    
T  32832621 aatgattaaaataaattatttagatgagagagaatgaatggttaagagagagatag 32832676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 507 - 542
Target Start/End: Complemental strand, 34392388 - 34392353
Alignment:
Q  507 ttattttgatgagagagaatgagttgttaagagaga 542  Q
    ||||||||||||||||||||||||||||||||||||    
T  34392388 ttattttgatgagagagaatgagttgttaagagaga 34392353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 492 - 573
Target Start/End: Original strand, 36562768 - 36562849
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaa 573  Q
    ||||| |||||| | |||||| ||||||||||||||| |  |||||||||||||||  |||| | |||| ||||||||||||    
T  36562768 aatgagtaaaataaattatttagatgagagagaatgaatgattaagagagagataggaacaatggtaccaatgacaccaaaa 36562849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 1208677 - 1208617
Alignment:
Q  494 tgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    |||||||||| | ||||||| |||||||||||| | | ||||||||||||||||| |||||    
T  1208677 tgattaaaataaattattttaatgagagagaattattggttaagagagagatagagacaaa 1208617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 554
Target Start/End: Complemental strand, 39729049 - 39728987
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    |||||||||||| | |||||| |||||||||||||  |||| ||||| ||| |||||||||||    
T  39729049 aatgattaaaataaattatttagatgagagagaatatgttggtaagaaagaaatagacacaaa 39728987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 556
Target Start/End: Complemental strand, 14818756 - 14818707
Alignment:
Q  507 ttattttgatgagagagaatgagttgttaagagagagatagacacaaagt 556  Q
    |||||||||||||||||||| | | |||| |||||||||||| |||||||    
T  14818756 ttattttgatgagagagaattattggttatgagagagatagagacaaagt 14818707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 467 - 571
Target Start/End: Original strand, 37515565 - 37515669
Alignment:
Q  467 cataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgac 566  Q
    |||| ||||||||||||| ||||| |||||||||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||     
T  37515565 cataagttcattttagataaaagagaatgattaaaataaattatttagatgatagataatgagttgttaagagagagatagacacaaagttacctatgat 37515664  T
Q  567 accaa 571  Q
    |||||    
T  37515665 accaa 37515669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 462 - 559
Target Start/End: Complemental strand, 37480375 - 37480280
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttac 559  Q
    |||| |||| |||||||||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||  |||||||||||||| ||||    
T  37480375 ggtgacataagttcattttagatgaaagaaaatgattaaaataaattacttagatgagagagaatgagttgttaaga--gagatagacacaaaattac 37480280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 462 - 554
Target Start/End: Complemental strand, 2651717 - 2651623
Alignment:
Q  462 ggtgccataggttcattttagatgaaagaa--aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    |||| |||| |||||||||||||| | |||  |||||||||||| | |||||| ||||||| |||||  |||| ||||||||||||| |||||||    
T  2651717 ggtgacataagttcattttagatgtatgaatgaatgattaaaataaattatttagatgagatagaatatgttggtaagagagagataaacacaaa 2651623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 555
Target Start/End: Original strand, 21355259 - 21355307
Alignment:
Q  507 ttattttgatgagagagaatgagttgttaagagagagatagacacaaag 555  Q
    |||||| ||||||||||||||| | ||||||||||||||||| ||||||    
T  21355259 ttatttagatgagagagaatgaatggttaagagagagatagaaacaaag 21355307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 547
Target Start/End: Complemental strand, 19824647 - 19824592
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatag 547  Q
    |||||||||||| | |||||| ||||||||||||||| | ||| ||||||||||||    
T  19824647 aatgattaaaataaattatttagatgagagagaatgaatggtttagagagagatag 19824592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 548
Target Start/End: Original strand, 9116237 - 9116318
Alignment:
Q  467 cataggttcattttagatgaaagaaaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagataga 548  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||  |||||||||||||||||||||| | |||||||||    
T  9116237 cataggttcattttagatgaaagagaatgattaaaataaattatttaaatgagagagaatgagttgttaaaaaagagataga 9116318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 46079368 - 46079430
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaa 554  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  46079368 aatgattaaaataaattatttagatgagagagaatgagttgttaagagacagatagacacaaa 46079430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 492 - 589
Target Start/End: Original strand, 29544190 - 29544289
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacacc--aaaaaactaaggcacccaaa 589  Q
    |||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||| |  | ||| ||||  ||||||||| ||||||||||    
T  29544190 aatgattaaaataaattatttagatgatagagaatgagttgttaatagagagatagacacaaaggtgtcaatggcaccaaaaaaaactatggcacccaaa 29544289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 496 - 573
Target Start/End: Original strand, 52673230 - 52673307
Alignment:
Q  496 attaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaaaa 573  Q
    |||||||| | ||||||||||||||||||||  |||| |||||||||||||||||||||  || | ||||||||||||    
T  52673230 attaaaataaattattttgatgagagagaatatgttggtaagagagagatagacacaaaaatatcaatgacaccaaaa 52673307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 53406516 - 53406578
Alignment:
Q  491 aaatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaa 553  Q
    |||| |||||||| | |||||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  53406516 aaataattaaaataaattatttagataagagaaaatgaattgttaagagagagatagacacaa 53406578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 492 - 556
Target Start/End: Complemental strand, 47907342 - 47907278
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagagagatagacacaaagt 556  Q
    |||||||||||| | ||||||||||||||||  |||| |  ||| ||||||||||||||||||||    
T  47907342 aatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 47907278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 542
Target Start/End: Original strand, 50041842 - 50041892
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagaga 542  Q
    |||||||||||| | |||||||||||||||||||| | | |||||||||||    
T  50041842 aatgattaaaataaattattttgatgagagagaattattggttaagagaga 50041892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 542
Target Start/End: Original strand, 50049064 - 50049114
Alignment:
Q  492 aatgattaaaatgatttattttgatgagagagaatgagttgttaagagaga 542  Q
    |||||||||||| | |||||||||||||||||||| | | |||||||||||    
T  50049064 aatgattaaaataaattattttgatgagagagaattattggttaagagaga 50049114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 5052152 - 5052115
Alignment:
Q  491 aaatgattaaaatgatttattttgatgagagagaatga 528  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  5052152 aaatgattaaaataaattattttgatgagagagaatga 5052115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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