View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5823-Insertion-4 (Length: 696)

Name: NF5823-Insertion-4
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5823-Insertion-4
NF5823-Insertion-4
[»] chr4 (13 HSPs)
chr4 (429-696)||(34140950-34141217)
chr4 (429-696)||(34137287-34137554)
chr4 (429-696)||(34133376-34133643)
chr4 (441-696)||(34127115-34127370)
chr4 (353-429)||(34140342-34140418)
chr4 (96-211)||(40333269-40333383)
chr4 (9-69)||(34140266-34140326)
chr4 (293-347)||(40333025-40333079)
chr4 (210-250)||(40333163-40333203)
chr4 (219-257)||(40333076-40333114)
chr4 (228-268)||(6020123-6020164)
chr4 (228-268)||(48583854-48583895)
chr4 (307-351)||(48583945-48583989)
[»] chr7 (3 HSPs)
chr7 (219-353)||(13066753-13066886)
chr7 (93-213)||(13066481-13066600)
chr7 (210-250)||(13066664-13066704)
[»] chr8 (2 HSPs)
chr8 (94-213)||(17074356-17074474)
chr8 (94-213)||(17573796-17573914)
[»] chr5 (1 HSPs)
chr5 (228-289)||(41312972-41313034)
[»] chr2 (1 HSPs)
chr2 (237-271)||(13557696-13557730)
[»] chr6 (1 HSPs)
chr6 (219-271)||(12868900-12868952)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 429 - 696
Target Start/End: Original strand, 34140950 - 34141217
Alignment:
Q  429 aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140950 aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact 34141049  T
Q  529 caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact 628  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34141050 caaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttccaatctccttgactaagctttcaatagcagatggatttggaact 34141149  T
Q  629 tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141150 tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg 34141217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 429 - 696
Target Start/End: Original strand, 34137287 - 34137554
Alignment:
Q  429 aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact 528  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  34137287 aaccagttggattgatttcatctctagcaaccttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagact 34137386  T
Q  529 caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact 628  Q
    | ||||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||    
T  34137387 cgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaact 34137486  T
Q  629 tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg 696  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||||||| ||||  |||||||||||    
T  34137487 tcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttgg 34137554  T

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Target: chr4; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 429 - 696
Target Start/End: Original strand, 34133376 - 34133643
Alignment:
Q  429 aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact 528  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  34133376 aaccagtaggattgacctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagact 34133475  T
Q  529 caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact 628  Q
    ||||||||||||||||||||| |||| |||||| |||||||| |||| |||||||||||||||||| || ||| |||||||| |||||||||||||||||    
T  34133476 caaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaact 34133575  T
Q  629 tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg 696  Q
     ||| ||| |  ||||||||||| |||||||| ||||| ||||||||||| |||| ||||||||||||    
T  34133576 gcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttgg 34133643  T

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Target: chr4; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 441 - 696
Target Start/End: Original strand, 34127115 - 34127370
Alignment:
Q  441 tgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactcc 540  Q
    ||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| || ||||| | ||||||||||||  |    
T  34127115 tgatctcatctctggcaaccttcattttctcctccaaactttgagcaaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggacctc 34127214  T
Q  541 atggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaacttcattgtggaat 640  Q
    |||||||||||||| |||||| ||||| || ||||||||||||||||||| ||| || ||||| |||||||||||| ||| | ||||||||| |||||||    
T  34127215 atggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttcttcaccaagctatcaatagcagattgatcttgaacttcatggtggaat 34127314  T
Q  641 attggagagagatcaatttctggaatacctttggcttctatgagggagagttttgg 696  Q
    ||||| ||||| |||||||| ||||| |||| |||||| |||| ||| ||||||||    
T  34127315 attggtgagaggtcaatttcgggaattccttcggcttcaatgatggatagttttgg 34127370  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 34140342 - 34140418
Alignment:
Q  353 taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140342 taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa 34140418  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 40333383 - 40333269
Alignment:
Q  96 aaaatgctaaaatacacgacaaaatttgtcgtcagatttacacgacaagtgctaaaattaccacttcctannnnnnncctaattttgatttgacacaaat 195  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||  |  |||||||||||||||       |||||||||||||||||||||||    
T  40333383 aaaatgctaaaatacacgacaaaatttgtcgtcatatttacacaacaagt-ttgtaattaccacttcctatttttttcctaattttgatttgacacaaat 40333285  T
Q  196 gacaaattttgcctcc 211  Q
    ||||||||||||||||    
T  40333284 gacaaattttgcctcc 40333269  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 34140266 - 34140326
Alignment:
Q  9 ctttgaatactcattgaattgaattgcaatcctaaattatattttgacacataaattggac 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34140266 ctttgaatactcattgaattgaattgcaatcctaaattatattttgacacagaaattggac 34140326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 40333079 - 40333025
Alignment:
Q  293 caaattgtatgttcgtgtggctctcgtgtgctgactttgtcttgctgtatagcag 347  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40333079 caaattgtatgttcgtgtggctctcgtgtgctgactttgtcgtgctgtatagcag 40333025  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 40333203 - 40333163
Alignment:
Q  210 ccaccattcctttggtagcattgttttttaatatatactat 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40333203 ccaccattcctttggtagcattgttttttaatatatactat 40333163  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 40333114 - 40333076
Alignment:
Q  219 ctttggtagcattgttttttaatatatactataaacaaa 257  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  40333114 ctttgataacattgttttttaatatatactataaacaaa 40333076  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 6020164 - 6020123
Alignment:
Q  228 cattgttttttaatata-tactataaacaaaagcatcaataa 268  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  6020164 cattgttttttaatatactactatatacaaaagcatcaataa 6020123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 48583854 - 48583895
Alignment:
Q  228 cattgttttttaatata-tactataaacaaaagcatcaataa 268  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  48583854 cattgttttttaatatactactatatacaaaagcatcaataa 48583895  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 48583945 - 48583989
Alignment:
Q  307 gtgtggctctcgtgtgctgactttgtcttgctgtatagcagcgct 351  Q
    |||||||| ||||||| ||| |||||| |||||||||||||||||    
T  48583945 gtgtggctttcgtgtgttgattttgtcgtgctgtatagcagcgct 48583989  T

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Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 219 - 353
Target Start/End: Original strand, 13066753 - 13066886
Alignment:
Q  219 ctttggtagcattgttttttaatatatactataaacaaaagcatcaataaactgaaagaaaactaataatacagcaaattgtatgttcgtgtggctctcg 318  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13066753 ctttgataacattgttttttaatatatactataaacaaaagcatcaataaactgaaagaaa-ctaataatacaacaaattgtatgttcgtgtggctctcg 13066851  T
Q  319 tgtgctgactttgtcttgctgtatagcagcgctct 353  Q
    ||||||||||||||| ||||||||||||| |||||    
T  13066852 tgtgctgactttgtcatgctgtatagcagtgctct 13066886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 13066481 - 13066600
Alignment:
Q  93 aggaaaatgctaaaatacacgacaaaatttgtcgtcagatttacacgacaagtgctaaaattaccacttcctannnnnnncctaattttgatttgacaca 192  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||  |  |||||||||||||||       ||||||||||||||||||||    
T  13066481 aggaaaatgctaaaatacacgacaaaatttgtcgacagatttacacgacaagt-ttgtaattaccacttcctatttttttcctaattttgatttgacaca 13066579  T
Q  193 aatgacaaattttgcctccac 213  Q
    ||||||||||||| |||||||    
T  13066580 aatgacaaatttttcctccac 13066600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 13066664 - 13066704
Alignment:
Q  210 ccaccattcctttggtagcattgttttttaatatatactat 250  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  13066664 ccaccatttctttggtagcattgttttttaatatatactat 13066704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 17074356 - 17074474
Alignment:
Q  94 ggaaaatgctaaaatacacgacaaaatttgtcgtcagatttacacgacaagtgctaaaattaccacttcctannnnnnncctaattttgatttgacacaa 193  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||  |   |||||||||| |||       |||||||||||||||||||||    
T  17074356 ggaaaatgttaaaatacacgacaaaaattgtcgtcaaatttacacgacaagt-ttgttattaccacttactatttttttcctaattttgatttgacacaa 17074454  T
Q  194 atgacaaattttgcctccac 213  Q
    |||||||||| |||||||||    
T  17074455 atgacaaattatgcctccac 17074474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 17573914 - 17573796
Alignment:
Q  94 ggaaaatgctaaaatacacgacaaaatttgtcgtcagatttacacgacaagtgctaaaattaccacttcctannnnnnncctaattttgatttgacacaa 193  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||  |   |||||||||| |||       |||||||||||||||||||||    
T  17573914 ggaaaatgttaaaatacacgacaaaaattgtcgtcaaatttacacgacaagt-ttgttattaccacttactatttttttcctaattttgatttgacacaa 17573816  T
Q  194 atgacaaattttgcctccac 213  Q
    |||||||||| |||||||||    
T  17573815 atgacaaattatgcctccac 17573796  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 41313034 - 41312972
Alignment:
Q  228 cattgttttttaatata-tactataaacaaaagcatcaataaactgaaagaaaactaataata 289  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |  ||||||| ||| |||||    
T  41313034 cattgttttttaatatactactatatacaaaagcatcaataaccataaagaaatctattaata 41312972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 13557696 - 13557730
Alignment:
Q  237 ttaatatatactataaacaaaagcatcaataaact 271  Q
    ||||||||||||||| |||||||||||||||||||    
T  13557696 ttaatatatactatatacaaaagcatcaataaact 13557730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 12868900 - 12868952
Alignment:
Q  219 ctttggtagcattgttttttaatatatactataaacaaaagcatcaataaact 271  Q
    |||||||| ||| ||||||||||||||| | || ||||||||||| |||||||    
T  12868900 ctttggtaacatggttttttaatatatattttatacaaaagcatcgataaact 12868952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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