View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_high_11 (Length: 251)
Name: NF5823_high_11
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2815886 - 2816127
Alignment:
| Q |
1 |
aatcctcaactcaaatctaaacaaatgtacaatctaaacttcatcaatcaaatcatggaaccnnnnnnnngagaactatttggaatcaactcaagtatat |
100 |
Q |
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| T |
2815886 |
aatcctcaactcaaatctaaacaaatgtacaatctaaacttcatcaatcaaatcatggaaccaaaaaaaagagaactatttggaatcaactcaagtatat |
2815985 |
T |
|
| Q |
101 |
tccaattcaaaaactttcttgattttttcttatttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataaggttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2815986 |
tccaattcaaaaactttcttgattttttcttatttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataagattttt |
2816085 |
T |
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| Q |
201 |
aagtagagctttctcttcatcaattttctgtttctcctttgc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816086 |
aagtagagctttctcttcatcaattttctgtttctcctttgc |
2816127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 5436111 - 5436216
Alignment:
| Q |
133 |
tttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataaggtttttaagtagagctttctcttcatcaattttctgtt |
232 |
Q |
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|||||||||||||| || || ||||||||||||||| ||||| || || |||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
5436111 |
tttggacaaagataggagaaacatcatcgttagatacttgggatagattttgaccgaataaggtttttaagaagagctttctcttcatcaattctctgtt |
5436210 |
T |
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| Q |
233 |
tctcct |
238 |
Q |
| |
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|||||| |
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| T |
5436211 |
tctcct |
5436216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 5428868 - 5428952
Alignment:
| Q |
154 |
catcatcgttagatatgcgggattgacttagaccgaataaggtttttaagtagagctttctcttcatcaattttctgtttctcct |
238 |
Q |
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||||||| ||||||| ||||| || || || |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
5428868 |
catcatccttagatacttgggatggattttgatcgaataaggtttttaagtagagctttctcttcttcaattttccgtttctcct |
5428952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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