View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_high_5 (Length: 345)
Name: NF5823_high_5
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 47304361 - 47304318
Alignment:
| Q |
7 |
gaagaatataatattttctccatttcaaaacgaatgttgcttta |
50 |
Q |
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|||||| |||||||||||||||||||||||||||| | |||||| |
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| T |
47304361 |
gaagaaaataatattttctccatttcaaaacgaatatcgcttta |
47304318 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 30354584 - 30354541
Alignment:
| Q |
77 |
tttctccaaaattttgtttgtttgttttaaaaggtataatggcg |
120 |
Q |
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||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
30354584 |
tttctccaaaattgtgtttgtttgttctaaaaagtataatggcg |
30354541 |
T |
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