View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_high_6 (Length: 313)
Name: NF5823_high_6
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 43131329 - 43131602
Alignment:
| Q |
15 |
tatggtaagtcccctaaacaaaatcttatgataatgaatttgtgaannnnnnnatcacaccctcctagcttctcgcacgtcttattttaggattgtaaaa |
114 |
Q |
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| T |
43131329 |
tatggtaagtcccctaaacaaaatcttatgataatgaatttgtgaatttttttatcacaccctcctagcttctcacacatcttactttacgattgtaaaa |
43131428 |
T |
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| Q |
115 |
ttcaataaaatggggannnnnnnnnnnnnnnnnnaaaattatcttatacttttcatagaatgaaatacggaactcaatagggtatttggaagagatcaaa |
214 |
Q |
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| T |
43131429 |
ttcaataaaatggggattttttttttcttttt---aaattatcttatgcttttcatagaatgaaatacggaactcaatagggtatttggaagag---aaa |
43131522 |
T |
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| Q |
215 |
agagcgcgataagaaaacaccaatgaannnnnnnnagcttgagattgaagaattatcagtgaagacctaatttgatccctg |
295 |
Q |
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| T |
43131523 |
agagtgcgataagaaaacaccaatgaa-tttttttagtttgagattgaagaattttcaatgaagacctaatttgatccctg |
43131602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 292
Target Start/End: Complemental strand, 48212596 - 48212463
Alignment:
| Q |
154 |
tatcttatacttttcatagaatgaaatacggaactcaatagggtatttggaagagatcaaaagagcgcgataagaaaacaccaatgaannnnnnnnagct |
253 |
Q |
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| T |
48212596 |
tatcttgtgcttttcataaaataaaatctgaaattcaatagtgtatttgaaagagat---aagagtgccataagaaaacaccaatgaattttttt--gct |
48212502 |
T |
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| Q |
254 |
tgagattgaagaattatcagtgaagacctaatttgatcc |
292 |
Q |
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| T |
48212501 |
tgatattgaagaattttgagtgaagacctaatttgatcc |
48212463 |
T |
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