View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5823_high_7 (Length: 297)

Name: NF5823_high_7
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5823_high_7
NF5823_high_7
[»] chr8 (2 HSPs)
chr8 (1-95)||(3387126-3387220)
chr8 (255-297)||(32307014-32307056)
[»] scaffold0009 (3 HSPs)
scaffold0009 (90-183)||(92214-92308)
scaffold0009 (79-183)||(87557-87662)
scaffold0009 (255-297)||(92100-92142)
[»] chr4 (8 HSPs)
chr4 (90-183)||(47249170-47249264)
chr4 (90-183)||(3955598-3955692)
chr4 (255-297)||(3955484-3955526)
chr4 (255-297)||(47249336-47249378)
chr4 (257-297)||(48007325-48007365)
chr4 (257-297)||(8346223-8346263)
chr4 (257-297)||(55157584-55157624)
chr4 (261-297)||(8179947-8179983)
[»] chr3 (6 HSPs)
chr3 (90-183)||(10533080-10533174)
chr3 (90-183)||(22949983-22950076)
chr3 (88-183)||(4805883-4805978)
chr3 (255-297)||(10533246-10533288)
chr3 (262-297)||(22200564-22200599)
chr3 (259-297)||(840898-840936)
[»] chr5 (2 HSPs)
chr5 (1-95)||(15806970-15807061)
chr5 (255-297)||(40090877-40090919)
[»] chr1 (6 HSPs)
chr1 (79-183)||(25628058-25628164)
chr1 (110-183)||(25623539-25623612)
chr1 (255-297)||(25623684-25623726)
chr1 (255-297)||(30332605-30332647)
chr1 (257-297)||(52053898-52053938)
chr1 (255-297)||(18459618-18459660)
[»] chr7 (2 HSPs)
chr7 (90-183)||(30351694-30351787)
chr7 (268-297)||(30351623-30351652)
[»] chr2 (1 HSPs)
chr2 (257-297)||(32447860-32447900)
[»] chr6 (1 HSPs)
chr6 (255-297)||(33362242-33362284)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3387126 - 3387220
Alignment:
Q  1 taatcatagttatatatcatatagcaaattataaagtagttaatcaaatgataaaaagatctaaattcagaaaggaggtactgatttcatattgg 95  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  3387126 taatcatagttatataccatatagcaaattataaagtagttaatcaaatgataaaaagatctaaattcagaaaggaggtgctgatttcattttgg 3387220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 32307014 - 32307056
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||| ||||| |||||||||| |||||||    
T  32307014 cacccccgtagtcgaaactggaggctgacgaatgtggagacta 32307056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 92308 - 92214
Alignment:
Q  90 tattggaatgataggccttgc-tttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatgactatt 183  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||||||||||||||||    
T  92308 tattggaatgataggccttgcctttctattgattttccaatgatacatatacaatgtcagattctgtgtctatttgctatacaatcatgactatt 92214  T

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Target: scaffold0009; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 87662 - 87557
Alignment:
Q  79 tactgatttcatattggaatgataggccttgc-tttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatg 177  Q
    |||||||  ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||  ||||||| |||| |||||||||||||| |||||| |    
T  87662 tactgataccatattggaatgataggtcttgcctttctattgattttccaatgataaatatacaatgtcagattctgtgtctatttgctatgcaatcacg 87563  T
Q  178 actatt 183  Q
    ||||||    
T  87562 actatt 87557  T

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Target: scaffold0009; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 92142 - 92100
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  92142 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 92100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 47249170 - 47249264
Alignment:
Q  90 tattggaatgataggccttgc-tttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatgactatt 183  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  47249170 tattggaatgataggccttgcctttctattgattttctaatgatacatatacaatgtcagtttctctgtctattagctatacaatcatgactatt 47249264  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 3955692 - 3955598
Alignment:
Q  90 tattggaatgataggccttgc-tttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatgactatt 183  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||   ||||||| |||| |||||||||||||||||||||||||||||    
T  3955692 tattggaatgatcggccttgcctttctattgattttccaatgatacatatgcaatgtcagattctgtgtctatttgctatacaatcatgactatt 3955598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 3955526 - 3955484
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  3955526 cacccccgtagttgaaacgggaggttgacgaatgttgagacta 3955484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 47249336 - 47249378
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  47249336 cacccccgtagtcgaaacgggaggctgacgaatgttgagacta 47249378  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 48007325 - 48007365
Alignment:
Q  257 cccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  48007325 cccccgtagtcgaaacgggaggttgacggatgttgagacta 48007365  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 8346263 - 8346223
Alignment:
Q  257 cccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  8346263 cccctgtagtcgaaacgggatgttgacgaatgttgagacta 8346223  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 55157624 - 55157584
Alignment:
Q  257 cccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  55157624 cccccgtagtcgaaacaggaggttgacggatgttgagacta 55157584  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 8179947 - 8179983
Alignment:
Q  261 cgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  8179947 cgtagtcaaaacgggaggttgacggatgttgagacta 8179983  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 10533080 - 10533174
Alignment:
Q  90 tattggaatgataggccttgc-tttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatgactatt 183  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||||||||||||||||    
T  10533080 tattggaatgataggccttgcctttctattgattttccaatgatacatatacaatgtcagattctgtgtctatttgctatacaatcatgactatt 10533174  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 22950076 - 22949983
Alignment:
Q  90 tattggaatgataggccttgc-tttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatgactatt 183  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  22950076 tattggaatgataggccttgcctttctattgattttc-aatgatacatatctgatgtaagtttctctgtatatttgctatacaatcatgactatt 22949983  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 4805883 - 4805978
Alignment:
Q  88 catattggaatgataggccttg-ctttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatgactatt 183  Q
    ||||||| |||||||||||||| ||||||||| |||||| |||||||||||||  |||||||||||||||| ||||||| |||||||||||| ||||    
T  4805883 catattgaaatgataggccttgtctttctatttattttc-aatgatacatatacaatgtcagtttctctgtatatttgcaatacaatcatgaatatt 4805978  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 10533246 - 10533288
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10533246 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 10533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 297
Target Start/End: Complemental strand, 22200599 - 22200564
Alignment:
Q  262 gtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||| |||||||||||||||||||||||||||    
T  22200599 gtagtcgagacgggaggttgacgaatgttgagacta 22200564  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 840898 - 840936
Alignment:
Q  259 cccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  840898 cccgtagtcgaaacgggaggttgatgaatattgagacta 840936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 15807061 - 15806970
Alignment:
Q  1 taatcatagttatatatcatatagcaaattataaagtagttaatcaaatgataaaaagatctaaattcagaaaggaggtactgatttcatattgg 95  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||| |||||||||| ||||    
T  15807061 taatcatagttatataccatatagcaaattataaagtagttaaacaaatgataaaaagatctaaattc---aaggaggtgctgatttcattttgg 15806970  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 40090877 - 40090919
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    ||||| |||||||||||||| || |||||||||||||||||||    
T  40090877 cacccacgtagtcgaaacggaagtttgacgaatgttgagacta 40090919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 25628058 - 25628164
Alignment:
Q  79 tactgatttcatattggaatgataggcc-ttgc-tttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcat 176  Q
    |||||||  ||||||||||||||||||| |||| |||||||||||||||||||||||||||||  ||||||| |||| ||||||||| ||||||||||||    
T  25628058 tactgataccatattggaatgataggcccttgcctttctattgattttccaatgatacatatacaatgtcagattctgtgtctatttactatacaatcat 25628157  T
Q  177 gactatt 183  Q
    |||||||    
T  25628158 gactatt 25628164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 25623539 - 25623612
Alignment:
Q  110 ctttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatgactatt 183  Q
    ||||||||||||||||||||||||||||||  ||||||| || | ||||||||| |||||||||||||||||||    
T  25623539 ctttctattgattttccaatgatacatatacaatgtcagattttgtgtctatttactatacaatcatgactatt 25623612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 25623684 - 25623726
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25623684 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 25623726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 30332647 - 30332605
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  30332647 cacccccgtagtcgaaactggaggttgacgaatgttgagacta 30332605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 52053898 - 52053938
Alignment:
Q  257 cccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  52053898 cccccgtagtcgaaacgggaggttgacggatgttgagacta 52053938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 18459618 - 18459660
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  18459618 cacccccgtagtcaaaaccggaggttgtcgaatgttgagacta 18459660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 30351787 - 30351694
Alignment:
Q  90 tattggaatgataggccttgc-tttctattgattttccaatgatacatatatcatgtcagtttctctgtctatttgctatacaatcatgactatt 183  Q
    |||||||| |||||||||| | ||||||||||||||| ||||||  |||||  ||||| |||| ||||| |||||||||||||||||||||||||    
T  30351787 tattggaacgataggccttacctttctattgattttc-aatgatctatatacaatgtctgtttatctgtatatttgctatacaatcatgactatt 30351694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 297
Target Start/End: Complemental strand, 30351652 - 30351623
Alignment:
Q  268 gaaacgggaggttgacgaatgttgagacta 297  Q
    ||||||||||||||||||||||||||||||    
T  30351652 gaaacgggaggttgacgaatgttgagacta 30351623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 32447900 - 32447860
Alignment:
Q  257 cccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  32447900 cccccgtagtcgaaacgggaggttgacggatgttgagacta 32447860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 33362242 - 33362284
Alignment:
Q  255 cacccccgtagtcgaaacgggaggttgacgaatgttgagacta 297  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  33362242 cacccccgtagtcgaaactggaggctgacgaatgttgagacta 33362284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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