View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_high_9 (Length: 256)
Name: NF5823_high_9
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_high_9 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0096 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 30391684 - 30391455
Alignment:
| Q |
14 |
ttctcccccaaatttaatccactctctctataatacctttcaaggaaaaaggcgaagggagcaagagcaatagttgcaatggc--tatgatataccacaa |
111 |
Q |
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| T |
30391684 |
ttctctcccaaatttaatccactctctctataatacctttcaaggaaaaaggcgaaggg---------------tgcaatggcattacgatataccacaa |
30391600 |
T |
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| Q |
112 |
aaacataatgactcatgcccttgttaaaggcagccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataagcaagtatgatttata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30391599 |
aaacataatgactcatgcccttgttaaaggcagccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataggcaagtatgatttata |
30391500 |
T |
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| Q |
212 |
aatgttgaaccacgcattaactttctcacaaaatgttaactcacc |
256 |
Q |
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| T |
30391499 |
aattttgaaccatgcattaactttctcacaaaatgttaactcacc |
30391455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 32164301 - 32164250
Alignment:
| Q |
43 |
ataatacctttcaaggaaaaaggcgaagggagcaagagcaatagttgcaatg |
94 |
Q |
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| T |
32164301 |
ataatacctttcaaggaaataagcaaatggagcaagagcaatagttgcaatg |
32164250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 47163 - 47372
Alignment:
| Q |
47 |
tacctttcaaggaaaaaggcgaagggagcaagagcaatagttgcaatggc--tatgatataccacaaaaacataatgactcatgcccttgttaaaggcag |
144 |
Q |
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| T |
47163 |
tacctttctaggaaataggctaagggagcgagagcaattgtggcaatggtattacgatataccacaaaaacgtaatgactcatgcccttgttaaaggcag |
47262 |
T |
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| Q |
145 |
ccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataagcaagtatgatttataaatgttgaaccacgcattaactttctcacaaaa |
244 |
Q |
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| T |
47263 |
tcatggtgatgacaaacatgccagcagaaccaagttggattccgaacataaggaagtatgatttataaaatttgcagcacgcattaactttctggcaaaa |
47362 |
T |
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| Q |
245 |
tgttaactca |
254 |
Q |
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|||||||||| |
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| T |
47363 |
tgttaactca |
47372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 43 - 256
Target Start/End: Original strand, 10626289 - 10626504
Alignment:
| Q |
43 |
ataatacctttcaaggaaaaaggcgaagggagcaagagcaatagttgcaatggc--tatgatataccacaaaaacataatgactcatgcccttgttaaag |
140 |
Q |
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||||||||||||||||||||| || || |||||||||||||||||||||||| | || ||||||||||||||| ||| ||||||||||||||||||| | |
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| T |
10626289 |
ataatacctttcaaggaaaaaagcaaatggagcaagagcaatagttgcaatgacattacgatataccacaaaaatatagtgactcatgcccttgttaagg |
10626388 |
T |
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| Q |
141 |
gcagccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataagcaagtatgatttataaatgttgaaccacgcattaactttctcac |
240 |
Q |
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| T |
10626389 |
gcatccatagtcagaacatacattccagccgatccaaattgtaaacttaggataagcaaatatgatttggaatttctaaaccatgcactaactttctcac |
10626488 |
T |
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| Q |
241 |
aaaatgttaactcacc |
256 |
Q |
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| T |
10626489 |
aaaatgttaactcacc |
10626504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 21094616 - 21094497
Alignment:
| Q |
137 |
aaaggcagccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataagcaagtatgatttataaatgttgaaccacgcattaactttc |
236 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| |||||||||||||| | ||| | ||||||||||||||| |
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| T |
21094616 |
aaaggcagccattgtaataacaaacatgctagcagaaccaagttggattccgaacataaggaagtatgatttatagaatttgcagcacgcattaactttc |
21094517 |
T |
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| Q |
237 |
tcacaaaatgttaactcacc |
256 |
Q |
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| T |
21094516 |
taacaaaatgttaactcacc |
21094497 |
T |
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