View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_low_1 (Length: 503)
Name: NF5823_low_1
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 34577930 - 34578418
Alignment:
| Q |
1 |
tgtaccttagctaatgcccaaatgctaaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577930 |
tgtaccttagctaatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaa |
34578029 |
T |
|
| Q |
101 |
taacaattacacatataagaacctaatactagattttgctataaatgtaaggatatcaattttaatatgcataacatttctagtaaggttaactaattac |
200 |
Q |
| |
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| ||| ||||||| || | ||||| | || |||| | || ||||| ||| | || ||||| |||||||||||| ||||| ||||||| ||||||| |
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| T |
34578030 |
cattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattac |
34578129 |
T |
|
| Q |
201 |
cattccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgctgaggtagaataaagtcagttgatcacaacatag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34578130 |
cattccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgctgaagtagaataaagtcagttgatcacaacatag |
34578229 |
T |
|
| Q |
301 |
aaaatgaagaaaaacaattaaacattgaaatatataaataggaatggaattcttgaggagttgaggtcttatactttattaacctcaattatgttatgtt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34578230 |
aaaatgaagaaaaacaattaaacattgaaatatataaataggaaaggaattcttgaggagttgaggtcttatactttattaacctcaattatgttatgtt |
34578329 |
T |
|
| Q |
401 |
gttaaaagagacattgtaaaaggtatgaatttgaaatgtcatatgcatttactattttctcacctcttccaattatcttctatatcacc |
489 |
Q |
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| T |
34578330 |
gttaaaagagacattgtaaaaggtatgaatttgaaatgtcatatacatttactattttctcacctcttccaattatcttctatatcacc |
34578418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 34593766 - 34593857
Alignment:
| Q |
3 |
taccttagctaatgcccaaatgctaaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaata |
94 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||| | ||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
34593766 |
taccttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatctaata |
34593857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 34593907 - 34593986
Alignment:
| Q |
188 |
gttaactaattaccattccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgct |
267 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||| |||||||||||||| |
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|
| T |
34593907 |
gttaattaattaccattccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgct |
34593986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 4 - 313
Target Start/End: Original strand, 32600621 - 32600933
Alignment:
| Q |
4 |
accttagctaatgcccaaatgctaaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaataa |
103 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32600621 |
accttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaacat |
32600720 |
T |
|
| Q |
104 |
caattacacatataagaacctaatactagattttgctataaatgtaaggatatcaattttaatatgcataacatttctagtaaggttaactaattaccat |
203 |
Q |
| |
|
||| ||||||| || | ||||| | || |||| | || ||||| ||| | || ||||| |||||||||||| ||||| ||||||| |||||||||| |
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| T |
32600721 |
taatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattaccat |
32600820 |
T |
|
| Q |
204 |
tccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgctgagg--tagaataaagtcagttgatcacaacat-ag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||| | ||||||||| ||||| ||| || || || |
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| T |
32600821 |
tccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagtcatgctaagggatggaataaagttagttggtcataatataag |
32600920 |
T |
|
| Q |
301 |
aaaatgaagaaaa |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
32600921 |
aaaatgaagaaaa |
32600933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 313
Target Start/End: Original strand, 32590173 - 32590483
Alignment:
| Q |
4 |
accttagctaatgcccaaatgctaaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaataa |
103 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32590173 |
accttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaacat |
32590272 |
T |
|
| Q |
104 |
caattacacatataagaacctaatactagattttgctataaatgtaaggatatcaattttaatatgcataacatttctagtaaggttaactaattaccat |
203 |
Q |
| |
|
||| ||||||| || | ||||| | || |||| | || ||||| ||| | || |||| || ||||| ||| |||| ||||||| |||||||||| |
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|
| T |
32590273 |
taatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttaattaattaccat |
32590372 |
T |
|
| Q |
204 |
tccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgctgaggtagaataaagtcagttgatcacaacata-gaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || || ||||||||| ||||| ||| || ||| ||| |
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|
| T |
32590373 |
tccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatataggaa |
32590472 |
T |
|
| Q |
303 |
aatgaagaaaa |
313 |
Q |
| |
|
||||||||||| |
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|
| T |
32590473 |
aatgaagaaaa |
32590483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 24883773 - 24883687
Alignment:
| Q |
4 |
accttagctaatgcccaaatgctaaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatct |
90 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
24883773 |
accttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct |
24883687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 24883595 - 24883555
Alignment:
| Q |
197 |
ttaccattccatcctccaggtccagcataagatgcccattt |
237 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
24883595 |
ttaccattccatcctccaggtccagcgtaagaagcccattt |
24883555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 27532416 - 27532378
Alignment:
| Q |
52 |
gtcatgcctccatttccaacttcaagcatatcaggatct |
90 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
27532416 |
gtcatccctccatttccaacctcaagcatatcaggatct |
27532378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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