View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_low_10 (Length: 251)
Name: NF5823_low_10
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 41821577 - 41821340
Alignment:
| Q |
12 |
atgaaaaagaaagagtaacgatacattgatcactttatatggcaaactctctattctgcaccctcatgtggagagaggataaaagggaagagaagtnnnn |
111 |
Q |
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| T |
41821577 |
atgaaaaagaaagagtaacgatacattgatcaccctatatggcacactctccattctgcacccccatgtggagagaggataaaagggaagagaagtaaaa |
41821478 |
T |
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| Q |
112 |
nnnnnnnnntgccacatagaatgatatatgagtgatatgaggaaaaa-ggttgtcaatccataattattcaaaaagaaaatagactaagctttttaatat |
210 |
Q |
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| T |
41821477 |
aataaaaaatgccacatagaatgatatatgagtgacgtgaggaaaaaaggttgtcaacccataattatccaaaaagaaaatagactaagctttttaatat |
41821378 |
T |
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| Q |
211 |
caattctgcaattggcttatagtattatactaaacgaggca |
251 |
Q |
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| T |
41821377 |
aaattctgcaattggctta---tattatactaaacgaggca |
41821340 |
T |
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