View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_low_16 (Length: 233)
Name: NF5823_low_16
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 52330975 - 52330773
Alignment:
| Q |
14 |
cacagacaaccaacgcttgagagatacttaaatcgtatccagcttattggccttaatgaaaggctaggtaataatgtagtccacgactaccacacgtaca |
113 |
Q |
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| T |
52330975 |
cacacacaaccaacgcttgagagatacttaaatcgtatccagcttattggccttaatgaaaggctaggtaacaatgtagtccacgactaccacacgtaca |
52330876 |
T |
|
| Q |
114 |
tgtttctgttctttccatgtcttgcctgtccnnnnnnncaagtacnnnnnnngtgacattctgtggttcccattacaaattactttttgctagatgtggg |
213 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52330875 |
tgtttctgttctttccatgtcttgcctgtcctttttttcaagtacaaaaaaagtgacattctgtggttcccattacaaattactttttgctagatgtggg |
52330776 |
T |
|
| Q |
214 |
tac |
216 |
Q |
| |
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||| |
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| T |
52330775 |
tac |
52330773 |
T |
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