View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_low_17 (Length: 225)
Name: NF5823_low_17
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 18089972 - 18090174
Alignment:
| Q |
1 |
cctaactaattcatttatatgtgtgagtttttagtgactattatcgtttcgtctatnnnnnnnnttaggactattagagctttaaactagcataaaaatg |
100 |
Q |
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| T |
18089972 |
cctaactaattcatttatatgcgtgaatttttaatgactattatcgtttcgtctaaaaaaa----taggactattagagctttaaactagcataaaaatg |
18090067 |
T |
|
| Q |
101 |
cttaatgcagtccttaaacgagaagtaatgttcaacatgttgatatannnnnnnnccattcacgtgactcattcatagggatattcctttgtgttcttgt |
200 |
Q |
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| T |
18090068 |
cttaatgcagtccttaaacgagaagtaatgttcaacatgttgatatatattttttccattcacgtgactcattcatagggatattcctttgtgttcttgt |
18090167 |
T |
|
| Q |
201 |
gtcttgt |
207 |
Q |
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||||||| |
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| T |
18090168 |
gtcttgt |
18090174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 18082483 - 18082511
Alignment:
| Q |
157 |
cattcacgtgactcattcatagggatatt |
185 |
Q |
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| T |
18082483 |
cattcacgtgactcattcatagggatatt |
18082511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 32105200 - 32105157
Alignment:
| Q |
13 |
atttatatgtgtgagtttttagtgactattatcgtttcgtctat |
56 |
Q |
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| T |
32105200 |
atttatatgtgtgattttttaatgactattatcatttcgtctat |
32105157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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