View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5823_low_2 (Length: 495)

Name: NF5823_low_2
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5823_low_2
NF5823_low_2
[»] chr3 (9 HSPs)
chr3 (1-495)||(39972676-39973190)
chr3 (304-413)||(4037125-4037234)
chr3 (304-408)||(49279473-49279577)
chr3 (287-408)||(11233473-11233594)
chr3 (290-413)||(39994161-39994284)
chr3 (302-383)||(10688590-10688671)
chr3 (375-413)||(39350780-39350818)
chr3 (306-367)||(782237-782298)
chr3 (301-384)||(50700000-50700078)
[»] scaffold0176 (1 HSPs)
scaffold0176 (279-413)||(15050-15184)
[»] chr7 (13 HSPs)
chr7 (279-413)||(34328066-34328198)
chr7 (313-413)||(46425315-46425415)
chr7 (304-403)||(16876724-16876823)
chr7 (304-403)||(23185910-23186009)
chr7 (315-413)||(18867925-18868023)
chr7 (321-384)||(2628463-2628526)
chr7 (327-383)||(27311802-27311858)
chr7 (281-383)||(9488798-9488900)
chr7 (307-356)||(32279347-32279396)
chr7 (320-383)||(42691097-42691160)
chr7 (320-383)||(42971671-42971734)
chr7 (331-396)||(48068390-48068455)
chr7 (302-362)||(31658000-31658060)
[»] chr1 (16 HSPs)
chr1 (282-413)||(48843338-48843469)
chr1 (304-413)||(27907687-27907796)
chr1 (304-413)||(27032297-27032406)
chr1 (284-408)||(51748516-51748640)
chr1 (321-383)||(48915013-48915075)
chr1 (321-383)||(48915203-48915265)
chr1 (321-383)||(48915404-48915466)
chr1 (285-382)||(19456339-19456436)
chr1 (289-382)||(50539757-50539850)
chr1 (320-383)||(19431418-19431481)
chr1 (302-383)||(24671138-24671219)
chr1 (280-360)||(26478522-26478602)
chr1 (303-383)||(46325618-46325698)
chr1 (322-367)||(5398066-5398111)
chr1 (319-384)||(7537010-7537075)
chr1 (303-383)||(46325398-46325476)
[»] chr6 (9 HSPs)
chr6 (304-413)||(9928245-9928354)
chr6 (304-413)||(22469683-22469792)
chr6 (304-413)||(7506616-7506725)
chr6 (304-408)||(31743844-31743946)
chr6 (328-384)||(6139326-6139382)
chr6 (333-383)||(9549379-9549429)
chr6 (329-383)||(28067321-28067375)
chr6 (319-383)||(9976984-9977048)
chr6 (347-383)||(28963618-28963654)
[»] chr8 (8 HSPs)
chr8 (310-408)||(33938595-33938693)
chr8 (292-407)||(16467571-16467686)
chr8 (304-407)||(16499813-16499920)
chr8 (321-383)||(4834998-4835060)
chr8 (304-407)||(16508738-16508841)
chr8 (319-383)||(12964329-12964393)
chr8 (333-383)||(44132901-44132951)
chr8 (323-383)||(41474306-41474366)
[»] chr2 (15 HSPs)
chr2 (300-413)||(15141860-15141973)
chr2 (313-397)||(3496792-3496876)
chr2 (329-413)||(19037044-19037128)
chr2 (306-383)||(11226132-11226209)
chr2 (304-383)||(23395917-23395996)
chr2 (279-383)||(41069701-41069805)
chr2 (304-354)||(39707457-39707507)
chr2 (280-366)||(31750424-31750510)
chr2 (306-383)||(6752102-6752179)
chr2 (328-383)||(32832621-32832676)
chr2 (333-368)||(34392353-34392388)
chr2 (302-383)||(36562768-36562849)
chr2 (321-381)||(1208617-1208677)
chr2 (321-383)||(39728987-39729049)
chr2 (319-368)||(14818707-14818756)
[»] chr5 (6 HSPs)
chr5 (304-408)||(37515565-37515669)
chr5 (316-413)||(37480280-37480375)
chr5 (321-413)||(2651623-2651717)
chr5 (320-368)||(21355259-21355307)
chr5 (328-383)||(19824592-19824647)
chr5 (301-368)||(22473342-22473407)
[»] chr4 (9 HSPs)
chr4 (327-408)||(9116237-9116318)
chr4 (321-383)||(46079368-46079430)
chr4 (286-383)||(29544190-29544289)
chr4 (302-379)||(52673230-52673307)
chr4 (322-384)||(53406516-53406578)
chr4 (319-383)||(47907278-47907342)
chr4 (333-383)||(50041842-50041892)
chr4 (333-383)||(50049064-50049114)
chr4 (347-384)||(5052115-5052152)


Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 39972676 - 39973190
Alignment:
Q  1 gaaaggattggctatttccaaaattcagcttgtactagttcttaaaattcatagtctcgttaacaatatttggctatttcctaaaccaaatgatacagtt 100  Q
    |||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39972676 gaaaggattggctatttccagaattcagcttgta---gttcttaaaattcatagtctcgttaacaatatttggctatttcctaaaccaaatcatacagtt 39972772  T
Q  101 ttttctttgacatgttagaaataaaaagaatcattgttaaaagctattaatcgaattcgcgattaattttccaaatgctgaacaaattggttcagattta 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39972773 ttttctttgacatgtttgaaataaaaagaatcattgttaaaagctattaatcgaattcgcgattaattttccaaatgctgaacaaattggttcggattta 39972872  T
Q  201 ttttctcataaaccaaaccaaactgttatgcctaggaagttttgttcctcccggttaaattagcgcctctttgtcccaggtagcatttgggtgccttagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  39972873 ttttctcataaaccaaaccaaactgttatgcctaggaagttttgttcctcctggttaaattagcgcctctttgtccccggtagcacttgggtgccttagt 39972972  T
Q  301 tttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatg 400  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  39972973 tttttgatgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattctctttcatctaaaatg 39973072  T
Q  401 aac----------------ctatggcaccca------tcc-ctttgtccctgcttttttagaagcatcctgatttccgtgacatatatttacgtgattgt 477  Q
    |||                ||||||||||||      ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39973073 aacctatatcaccaaaaaactatggcacccaagtatttcccctttgtccctgcttttttagaagcatcctgatttccgtgacatatatttacgtgattgt 39973172  T
Q  478 gaagtaacttaatactat 495  Q
    ||||||||||||||||||    
T  39973173 gaagtaacttaatactat 39973190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 4037125 - 4037234
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  4037125 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 4037224  T
Q  404 ctatggcacc 413  Q
    ||||| ||||    
T  4037225 ctatgtcacc 4037234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 49279473 - 49279577
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  49279473 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 49279572  T
Q  404 ctatg 408  Q
     ||||    
T  49279573 ttatg 49279577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 287 - 408
Target Start/End: Original strand, 11233473 - 11233594
Alignment:
Q  287 ttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttc 386  Q
    ||||||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||    
T  11233473 ttgggtgtcatagtttttttgtgtcagaggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctc 11233572  T
Q  387 tttcatctaaaatgaacctatg 408  Q
    ||||||||||||| ||| ||||    
T  11233573 tttcatctaaaataaacttatg 11233594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 290 - 413
Target Start/End: Original strand, 39994161 - 39994284
Alignment:
Q  290 ggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttcttt 389  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||| |||||    
T  39994161 ggtgccatagttttttggtgccataggtaactttgtatctatctctcttttaacaactcattctctctcatctaaataatttattttaatcattctcttt 39994260  T
Q  390 catctaaaatgaacctatggcacc 413  Q
    |||||||||| ||| |||| ||||    
T  39994261 catctaaaattaacttatgtcacc 39994284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 10688590 - 10688671
Alignment:
Q  302 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  10688590 ttttggtgccattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcatt 10688671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 39350818 - 39350780
Alignment:
Q  375 ttaatcattttctttcatctaaaatgaacctatggcacc 413  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  39350818 ttaatcattctctttcatctaaaatgaacctatggcacc 39350780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 782237 - 782298
Alignment:
Q  306 ggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaata 367  Q
    |||| ||| ||| ||||||| |||||||||||| ||||||  ||||||||||||||||||||    
T  782237 ggtgacattggtgactttgtctctatctctctcctaacaaaacattctctctcatcaaaata 782298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 50700000 - 50700078
Alignment:
Q  301 tttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 384  Q
    ||||||||||||| ||||  |||||||  |||||||||||||||   ||||||||||| || |||||| | |||||||||||||    
T  50700000 tttttggtgtcattggtacatttgtgt--atctctctcttaaca---cattctctctcgtctaaataatttattttaatcattt 50700078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 279 - 413
Target Start/End: Original strand, 15050 - 15184
Alignment:
Q  279 ggtagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaa 378  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  15050 ggtagcatttgggtgccatagttttttggtgtcataggtaactttgtgtctatctctatcttaacaactcattctctctcatcaaaataatttattttaa 15149  T
Q  379 tcattttctttcatctaaaatgaacctatggcacc 413  Q
    ||||| ||||||||||||||||||| |||| ||||    
T  15150 tcattatctttcatctaaaatgaacatatgtcacc 15184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 279 - 413
Target Start/End: Original strand, 34328066 - 34328198
Alignment:
Q  279 ggtagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaa 378  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||| |||||| | |||||||    
T  34328066 ggtagcacttgggtgccatagttttttggtgtcatagataactttgtgtctatctc--tcttaacaactcattctctctcatctaaataatttattttaa 34328163  T
Q  379 tcattttctttcatctaaaatgaacctatggcacc 413  Q
    ||||| |||||||||||||||||||||||| ||||    
T  34328164 tcattctctttcatctaaaatgaacctatgtcacc 34328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 46425415 - 46425315
Alignment:
Q  313 taggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| |||    
T  46425415 taggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcac 46425316  T
Q  413 c 413  Q
    |    
T  46425315 c 46425315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 304 - 403
Target Start/End: Complemental strand, 16876823 - 16876724
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  16876823 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 16876724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 304 - 403
Target Start/End: Complemental strand, 23186009 - 23185910
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  23186009 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 23185910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 18868023 - 18867925
Alignment:
Q  315 ggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  18868023 ggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 18867925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 2628526 - 2628463
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 384  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||    
T  2628526 tttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcattt 2628463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 27311858 - 27311802
Alignment:
Q  327 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||||||||| | | |||||||| ||||||||||||| ||||||||||||    
T  27311858 tctatctctctcttaactaataattctctcacatcaaaataaattattttaatcatt 27311802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 383
Target Start/End: Complemental strand, 9488900 - 9488798
Alignment:
Q  281 tagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatc 380  Q
    ||||| ||||||||| | |  |||||||| ||| | || |||||||| |||||||||||||||||||||||| || |  || |||||| | |||||||||    
T  9488900 tagcacttgggtgccattggcttttggtgccattgatacctttgtgtatatctctctcttaacaactcattccctattctctaaataatttattttaatc 9488801  T
Q  381 att 383  Q
    |||    
T  9488800 att 9488798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 32279396 - 32279347
Alignment:
Q  307 gtgtcataggtaactttgtgtctatctctctcttaacaactcattctctc 356  Q
    ||||||| |||| ||||||||||||||||||||||||||| || ||||||    
T  32279396 gtgtcattggtatctttgtgtctatctctctcttaacaacccactctctc 32279347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 42691160 - 42691097
Alignment:
Q  320 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||| |||||||||||| |||  | | |||||||||||||||||||| | ||||||||||||    
T  42691160 ctttgtctctatctctctcctaattaataattctctctcatcaaaataatttattttaatcatt 42691097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 42971734 - 42971671
Alignment:
Q  320 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||| ||||||||||||||||| |   ||||||||||||| |||||| | ||||||||||||    
T  42971734 ctttgtttctatctctctcttaaccatcaattctctctcatctaaataatttattttaatcatt 42971671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 48068455 - 48068390
Alignment:
Q  331 tctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaa 396  Q
    ||||||||||||| ||| ||| ||||||||| ||||||   ||||||||||| |||| ||||||||    
T  48068455 tctctctcttaaccacttattatctctcatctaaataatctattttaatcatcttctctcatctaa 48068390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 31658060 - 31658000
Alignment:
Q  302 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatca 362  Q
    |||||||| |||| || ||||||| ||||| |||||| |||| | ||||||||||||||||    
T  31658060 ttttggtgacatatgtgactttgtctctatatctctcctaaccaatcattctctctcatca 31658000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 48843338 - 48843469
Alignment:
Q  282 agcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatca 381  Q
    |||| ||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||    
T  48843338 agcacttgggtgccatagttttttgatgtcataggtaactttgtatctatctctctcttaacaattcattctctctcatctaaataatttattttaatca 48843437  T
Q  382 ttttctttcatctaaaatgaacctatggcacc 413  Q
    || |||||||||||||||||||||||| ||||    
T  48843438 ttctctttcatctaaaatgaacctatgtcacc 48843469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 27907687 - 27907796
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  27907687 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 27907786  T
Q  404 ctatggcacc 413  Q
    ||||| ||||    
T  27907787 ctatgtcacc 27907796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 27032406 - 27032297
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||| |||| ||||||||||    
T  27032406 ttggtgtcatgggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctctcatataaaatgaac 27032307  T
Q  404 ctatggcacc 413  Q
     |||| ||||    
T  27032306 atatgtcacc 27032297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 284 - 408
Target Start/End: Original strand, 51748516 - 51748640
Alignment:
Q  284 catttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||| |||||||||| ||  || ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| | ||||||||||||    
T  51748516 catttgggtgccatagttttttgatgctattggtaactttgtgtctatctttcttttaacaactcattctctctcatctaaataatttattttaatcatt 51748615  T
Q  384 ttctttcatctaaaatgaacctatg 408  Q
     |||||||| ||||||||| |||||    
T  51748616 ctctttcatttaaaatgaatctatg 51748640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 48915075 - 48915013
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915075 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 48915265 - 48915203
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915265 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 48915466 - 48915404
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915466 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 19456436 - 19456339
Alignment:
Q  285 atttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcat 382  Q
    |||| |||||| || |||||||||||||| || | |||||||||||||||| ||||||||| ||||||||||||||| |||||| | |||||||||||    
T  19456436 attttggtgccataattttttggtgtcattggcacctttgtgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcat 19456339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 50539850 - 50539757
Alignment:
Q  289 gggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcat 382  Q
    ||||||| |||||||||||||| || |  | |||||||||||||||||||||||||||||||||||| | ||  |||||| | |||||||||||    
T  50539850 gggtgccatagttttttggtgttattgacacctttgtgtctatctctctcttaacaactcattctcttttatttaaataatttattttaatcat 50539757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 19431481 - 19431418
Alignment:
Q  320 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||| ||||||||||| | ||||||||||||||| |||||| | ||||||||||||    
T  19431481 ctttgtgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatcatt 19431418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 24671138 - 24671219
Alignment:
Q  302 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||| | || |||||| || |||| ||||||||| ||||||||||||||||  |||||| | ||||||||||||    
T  24671138 ttttggtgtcattgatacctttgtttccatctttctcttaaccactcattctctctcatttaaataatttattttaatcatt 24671219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 26478522 - 26478602
Alignment:
Q  280 gtagcatttgggtgcc-ttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcat 360  Q
    |||||||||||||||| |||| ||||||||||||| |||| |||||||||||||| ||| ||||||| ||||| ||| ||||    
T  26478522 gtagcatttgggtgccattag-tttttggtgtcattggtacctttgtgtctatctttcttttaacaattcattatctttcat 26478602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 46325698 - 46325618
Alignment:
Q  303 tttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||| ||| ||| ||||||| |||| ||||||| |||  | |||||||||||||||||||||| | ||||||||||||    
T  46325698 tttggtgacattggtgactttgtctctaactctctcataatcaatcattctctctcatcaaaataacttattttaatcatt 46325618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 5398111 - 5398066
Alignment:
Q  322 ttgtgtctatctctctcttaacaactcattctctctcatcaaaata 367  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||    
T  5398111 ttgtctctatctctctcttaaccactcattctctctcatctaaata 5398066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 7537075 - 7537010
Alignment:
Q  319 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 384  Q
    ||||||| |||||||||||| |||| | ||| ||||| | |||||||||| | |||||||||||||    
T  7537075 actttgtctctatctctctcctaaccaatcactctcttttatcaaaataatttattttaatcattt 7537010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 46325398 - 46325476
Alignment:
Q  303 tttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||| ||| ||| ||||||| |||||||||||| |||  | ||||||||  |||||||||||| | ||||||||||||    
T  46325398 tttggtgacattggtgactttgtctctatctctctcataatcaatcattctc--tcatcaaaataatttattttaatcatt 46325476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 9928245 - 9928354
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  9928245 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 9928344  T
Q  404 ctatggcacc 413  Q
    ||||| ||||    
T  9928345 ctatgtcacc 9928354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 22469683 - 22469792
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  22469683 ttggtgccataggtaactttgtgtctatctctttcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 22469782  T
Q  404 ctatggcacc 413  Q
    ||||| ||||    
T  22469783 ctatgtcacc 22469792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 7506616 - 7506725
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  7506616 ttggtgccataggtaactttatatttatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 7506715  T
Q  404 ctatggcacc 413  Q
     |||||||||    
T  7506716 atatggcacc 7506725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 31743844 - 31743946
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    |||||||||||| ||  ||||||||||||||||| ||||||||| ||||||||  ||| |||||| | |||||||||||| |||||||||||||||||||    
T  31743844 ttggtgtcatagatagttttgtgtctatctctcttttaacaacttattctctc--atctaaataatttattttaatcattctctttcatctaaaatgaac 31743941  T
Q  404 ctatg 408  Q
     ||||    
T  31743942 ttatg 31743946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 6139326 - 6139382
Alignment:
Q  328 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 384  Q
    |||||||||| ||||| | ||||||||||||||| |||||| | |||||||||||||    
T  6139326 ctatctctcttttaaccattcattctctctcatctaaataatttattttaatcattt 6139382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 9549379 - 9549429
Alignment:
Q  333 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||||||||||||||||| ||  |||||| | ||||||||||||    
T  9549379 tctctcttaacaactcattctctctaatttaaataatttattttaatcatt 9549429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 28067321 - 28067375
Alignment:
Q  329 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||  |||| | |||||||||||||||||||||| | ||||||||||||    
T  28067321 tatctctcttctaaccaatcattctctctcatcaaaataatttattttaatcatt 28067375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 9977048 - 9976984
Alignment:
Q  319 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||| ||||||| | || |||||| |||| |||||| |||||||||| | ||||||||||||    
T  9977048 actttgtctctatctatttcataacaaatcatcctctctaatcaaaataatttattttaatcatt 9976984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 28963654 - 28963618
Alignment:
Q  347 tcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||||||||||||| | ||||||||||||    
T  28963654 tcattctctctcatcaaaataagttattttaatcatt 28963618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 310 - 408
Target Start/End: Complemental strand, 33938693 - 33938595
Alignment:
Q  310 tcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 408  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||| ||||||||||||||||||    
T  33938693 tcataggtaactttgtgtctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattatcttttatctaaaatgaacctatg 33938595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 292 - 407
Target Start/End: Original strand, 16467571 - 16467686
Alignment:
Q  292 tgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttca 391  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||| || | ||||||||||||| |||||| | | |||||||||| |||||||    
T  16467571 tgccatagttttttggtgtcatagataactttgtgtttatctctctcttaataatttattctctctcatctaaataatttagtttaatcattctctttca 16467670  T
Q  392 tctaaaatgaacctat 407  Q
    | ||||||||||||||    
T  16467671 tataaaatgaacctat 16467686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 16499920 - 16499813
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcat----tctctctcatcaaaataaatcattttaatcattttctttcatctaaaat 399  Q
    |||||| ||||| ||||||||||| |||||||||||||| |||| ||    ||||||||||| |||||| | | |||||||||| ||| |||| ||||||    
T  16499920 ttggtgccatagataactttgtgtttatctctctcttaataacttattctctctctctcatctaaataatttagtttaatcattctctctcatataaaat 16499821  T
Q  400 gaacctat 407  Q
    ||||||||    
T  16499820 gaacctat 16499813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 4835060 - 4834998
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||||| ||||||||||||||||||||| ||| | |||||| | ||||||||||||    
T  4835060 tttgtgtctatctttctcttaacaactcattctctttcacctaaataatttattttaatcatt 4834998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 16508841 - 16508738
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctc--atcaaaataaatcattttaatcattttctttcatctaaaatga 401  Q
    |||||| ||||| ||||||||||| |||||||||  ||| |||| ||||||||||  ||| |||||| | | |||||||||| ||| |||| ||||||||    
T  16508841 ttggtgccatagataactttgtgtttatctctct--taataacttattctctctctcatctaaataatttagtttaatcattctctctcatataaaatga 16508744  T
Q  402 acctat 407  Q
    ||||||    
T  16508743 acctat 16508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 12964329 - 12964393
Alignment:
Q  319 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||||| ||||| ||||  | ||||||||| |||||||||||| | ||||||||||||    
T  12964329 actttgtgtctatttctcttttaatcaatcattctctttcatcaaaataatttattttaatcatt 12964393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 44132951 - 44132901
Alignment:
Q  333 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  44132951 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 44132901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 41474366 - 41474306
Alignment:
Q  323 tgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||| ||||||||||||||| ||| ||||| ||  |||||| | ||||||||||||    
T  41474366 tgtgtctatttctctcttaacaacttattatctcttatttaaataatttattttaatcatt 41474306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 300 - 413
Target Start/End: Original strand, 15141860 - 15141973
Alignment:
Q  300 ttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaat 399  Q
    |||||||||  ||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||| | |||||||||||| |||||||||||||||    
T  15141860 ttttttggtaccatagataactttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattctctttcatctaaaat 15141959  T
Q  400 gaacctatggcacc 413  Q
    ||||||||| ||||    
T  15141960 gaacctatgtcacc 15141973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 397
Target Start/End: Complemental strand, 3496876 - 3496792
Alignment:
Q  313 taggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||| |||||||||    
T  3496876 taggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctctcatctaaa 3496792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 413
Target Start/End: Complemental strand, 19037128 - 19037044
Alignment:
Q  329 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 413  Q
    ||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 19037044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 11226132 - 11226209
Alignment:
Q  306 ggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  11226132 ggtgccattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcatt 11226209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 23395917 - 23395996
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||    
T  23395917 ttggtgtcattggtacatttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcatt 23395996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 279 - 383
Target Start/End: Complemental strand, 41069805 - 41069701
Alignment:
Q  279 ggtagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaa 378  Q
    ||||||| ||||||||| |||||||||  ||| || | ||  ||||||||||||| ||||||||||| ||||||||||||||| |||||| | |||||||    
T  41069805 ggtagcacttgggtgccgtagttttttaatgttattgatacatttgtgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaa 41069706  T
Q  379 tcatt 383  Q
    |||||    
T  41069705 tcatt 41069701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 39707507 - 39707457
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctc 354  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39707507 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctc 39707457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 31750424 - 31750510
Alignment:
Q  280 gtagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaat 366  Q
    |||||| ||||||||| | |  |||||||| ||| | || |||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  31750424 gtagcacttgggtgccattggcttttggtgccattgatacctttgtgtctatctctctcttaacaattcattttctctcatctaaat 31750510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 6752179 - 6752102
Alignment:
Q  306 ggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||| | || || ||||||||||||||||||||||||| | | ||||||||| |||||| | ||||||||||||    
T  6752179 ggtgtcattgatacctctgtgtctatctctctcttaacaacttactttctctcatctaaataatttattttaatcatt 6752102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 32832676 - 32832621
Alignment:
Q  328 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||||||| | ||||||||||||||| |||||| | ||||||||||||    
T  32832676 ctatctctctcttaaccattcattctctctcatctaaataatttattttaatcatt 32832621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 368
Target Start/End: Original strand, 34392353 - 34392388
Alignment:
Q  333 tctctcttaacaactcattctctctcatcaaaataa 368  Q
    ||||||||||||||||||||||||||||||||||||    
T  34392353 tctctcttaacaactcattctctctcatcaaaataa 34392388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 36562849 - 36562768
Alignment:
Q  302 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||| |||| | ||||  |||||||||||||||  | ||||||||||||||| |||||| | |||||| |||||    
T  36562849 ttttggtgtcattggtaccattgttcctatctctctcttaatcattcattctctctcatctaaataatttattttactcatt 36562768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 1208617 - 1208677
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatca 381  Q
    ||||| ||||||||||||||||| | | |||||||||||| ||||||| | ||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcattaaaataatttattttaatca 1208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 39728987 - 39729049
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||| ||| ||||| ||||  ||||||||||||| |||||| | ||||||||||||    
T  39728987 tttgtgtctatttctttcttaccaacatattctctctcatctaaataatttattttaatcatt 39729049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 14818707 - 14818756
Alignment:
Q  319 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataa 368  Q
    ||||||| |||||||||||| |||| | | ||||||||||||||||||||    
T  14818707 actttgtctctatctctctcataaccaataattctctctcatcaaaataa 14818756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 37515669 - 37515565
Alignment:
Q  304 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 403  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| | |||||||||||| ||||| |||||||||||||    
T  37515669 ttggtatcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctcttttatctaaaatgaac 37515570  T
Q  404 ctatg 408  Q
     ||||    
T  37515569 ttatg 37515565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 37480280 - 37480375
Alignment:
Q  316 gtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 413  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||| |||| ||||    
T  37480280 gtaattttgtgtctatctc--tcttaacaactcattctctctcatctaagtaatttattttaatcattttctttcatctaaaatgaacttatgtcacc 37480375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 413
Target Start/End: Original strand, 2651623 - 2651717
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt--ttctttcatctaaaatgaacctatggcacc 413  Q
    ||||||| ||||||||||||| ||||  ||||| ||||||| |||||| | ||||||||||||  ||| | |||||||||||||| |||| ||||    
T  2651623 tttgtgtttatctctctcttaccaacatattctatctcatctaaataatttattttaatcattcattcatacatctaaaatgaacttatgtcacc 2651717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 21355307 - 21355259
Alignment:
Q  320 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataa 368  Q
    |||||| ||||||||||||||||| | ||||||||||||||| ||||||    
T  21355307 ctttgtttctatctctctcttaaccattcattctctctcatctaaataa 21355259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 19824592 - 19824647
Alignment:
Q  328 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||| ||| | ||||||||||||||| |||||| | ||||||||||||    
T  19824592 ctatctctctctaaaccattcattctctctcatctaaataatttattttaatcatt 19824647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 22473342 - 22473407
Alignment:
Q  301 tttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataa 368  Q
    ||||||||| ||| |||| |||||||||||  ||||||||||||| | ||| ||||||||| ||||||    
T  22473342 tttttggtgccattggtacctttgtgtcta--tctctcttaacaatttattttctctcatctaaataa 22473407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 327 - 408
Target Start/End: Complemental strand, 9116318 - 9116237
Alignment:
Q  327 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 408  Q
    ||||||||| | ||||||||||||||||||||||  |||||| | |||||||||||| ||||||||||||||||||||||||    
T  9116318 tctatctcttttttaacaactcattctctctcatttaaataatttattttaatcattctctttcatctaaaatgaacctatg 9116237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 46079430 - 46079368
Alignment:
Q  321 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  46079430 tttgtgtctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcatt 46079368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 383
Target Start/End: Complemental strand, 29544289 - 29544190
Alignment:
Q  286 tttgggtgccttagtttttt--ggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||| |||||||||  |||| ||| |  | |||||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||||||||    
T  29544289 tttgggtgccatagttttttttggtgccattgacacctttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcatt 29544190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 379
Target Start/End: Complemental strand, 52673307 - 52673230
Alignment:
Q  302 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaat 379  Q
    |||||||||||| | ||  ||||||||||||||||||||| ||||  |||||||||||||||||||| | ||||||||    
T  52673307 ttttggtgtcattgatatttttgtgtctatctctctcttaccaacatattctctctcatcaaaataatttattttaat 52673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 53406578 - 53406516
Alignment:
Q  322 ttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 384  Q
    |||||||||||||||||||||||| ||||| ||||| ||| |||||| | |||||||| ||||    
T  53406578 ttgtgtctatctctctcttaacaattcattttctcttatctaaataatttattttaattattt 53406516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 47907278 - 47907342
Alignment:
Q  319 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    |||||||||||||||||||| |||  | ||||  |||||||||||||||| | ||||||||||||    
T  47907278 actttgtgtctatctctctcataaggaatcatcatctctcatcaaaataatttattttaatcatt 47907342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 50041892 - 50041842
Alignment:
Q  333 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  50041892 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 50041842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 50049114 - 50049064
Alignment:
Q  333 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 383  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  50049114 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 50049064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 5052115 - 5052152
Alignment:
Q  347 tcattctctctcatcaaaataaatcattttaatcattt 384  Q
    |||||||||||||||||||||| | |||||||||||||    
T  5052115 tcattctctctcatcaaaataatttattttaatcattt 5052152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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