View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_low_3 (Length: 363)
Name: NF5823_low_3
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 2413027 - 2413363
Alignment:
| Q |
11 |
agaatatgagcaataaaatggacaaacagctgaaccaagtgaatcactgtatgaaccttgatactgcaaagcaaactgataaaccttttgtgcagtcctc |
110 |
Q |
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| T |
2413027 |
agaatatgagcaataaaatggacaaacagctgaaccaagtgaatcactgtatgaaccttgatactgcaaagcaaactgataaaccttttgtgcagtcctc |
2413126 |
T |
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| Q |
111 |
aacaaaagcttagaataagttggatcaacttttctaaaaacaatagacgccgcagcaagtgcagcagcggtttcagcggcaacatcagaaccaggattct |
210 |
Q |
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| T |
2413127 |
aacaaaagcttagaataagttggatcaacttttctaaaaacaatagacgccgcagcaagtgcagcagcggtttcagcggcaacatcagaaccgggattct |
2413226 |
T |
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| Q |
211 |
ttgaagatacgtaataaacagttctaacagtgtccatatcttctggtctttcccaacatttgtgatcaacatttggatctccaacaccaacatagagtct |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2413227 |
ttgaagatacgaaataaacagttctaacagtgtccatatcttctggtctttcccaacatttgtgatcaacatttggatctccaacaccaacatagagtct |
2413326 |
T |
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| Q |
311 |
tccaggtgttgatgttgcacatttgaggagataatct |
347 |
Q |
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| T |
2413327 |
tccaggtgttgatgttgcacatttgaggagataatct |
2413363 |
T |
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