View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823_low_4 (Length: 350)
Name: NF5823_low_4
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 39973230 - 39973570
Alignment:
| Q |
1 |
tagtagcaagttgttgcacttttttcatatgttatcattacatcttagtgctcaaaatttctaccagtac----------tttttcaggtgaaaagcatg |
90 |
Q |
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| T |
39973230 |
tagtagcaagttgttgcacttttt-catatgttatcattacatcttagtgctcaaaatttatacaagtacacagtaatactttttcaggtgaaaagcatg |
39973328 |
T |
|
| Q |
91 |
ttttctcctttattaaagaaaaaataaaatattgacgtcatacaaagnnnnnnnntcaaagttgtatcatgggaacagttgccatcattcggtgggaagc |
190 |
Q |
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| T |
39973329 |
ttttctcctttattaaagaaaaaataaaatattgacgtcatacaaagaaaaaaaatcaaagttgtatcatgggaacagttgccatcattcggtgggaagc |
39973428 |
T |
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| Q |
191 |
atccagtctcttctctttgtaatgttttttcacagatctctttgatttttgttttaatgtaaaagtttcacttagttacatgtttatgaggtgtcatgtt |
290 |
Q |
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| T |
39973429 |
atccagtctcttctctttctaatgttttttcacagatttctttgatttttgttttaatgtcaaagtttcacttagttacatgtttatgaggtgtcatgtt |
39973528 |
T |
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| Q |
291 |
ttggttggatatgaccaaatatcatttcttagtcatgtgacc |
332 |
Q |
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| T |
39973529 |
ttggttggatatgaccaaatatcatttcttagtcatgtgacc |
39973570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 46673675 - 46673710
Alignment:
| Q |
275 |
tatgaggtgtcatgttttggttggatatgaccaaat |
310 |
Q |
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| T |
46673675 |
tatgaggtgtcatgttttggttggatgtgaccaaat |
46673710 |
T |
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