View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-1 (Length: 1049)
Name: NF5824-Insertion-1
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 688; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 9 - 890
Target Start/End: Original strand, 7722848 - 7723718
Alignment:
| Q |
9 |
ataaacagtagtaattctgcagagatataatagaaactcaaacacttgcttacattacacactcactccctgacttacccttcatttcatttattgcatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722848 |
ataaacagtagtaattctgcagagatataatagaaactcaaacacttgcttacattacacactcactccctgacttacccttcatttcatttattgcatt |
7722947 |
T |
|
| Q |
109 |
gggtccnnnnnnnnnnnntatgctctataattttatctcctttactatatatattttgtatttgtatgtacatgtctccatttgcaattcacgacaacgt |
208 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722948 |
gggtccctctctctct--tatgctttataattttatctcctttactatatatattttgtatttgtatgtacatgtctccatttgcaattcacgacaacgt |
7723045 |
T |
|
| Q |
209 |
ggactgcaggtgctgactagtatttcgacattttattatcttcaaacactacaagacaacaattcactcttctctactctactctactctnnnnnnnccc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
7723046 |
ggactgcaggtgctgactagtatttcgacattttattatcttcaaacactacaagacaacaattcactcttctctactctaaaaaac----------ccc |
7723135 |
T |
|
| Q |
309 |
ttcaaatcattcattttccattactctttttcacaaagaatgatgcatcgttcatctcaagggcaacacgtgatgggacactgttcatgtggtatgtttc |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7723136 |
ttcaaatcattcattttccattactctttttcacaaagaatgatgcatcgttcatctcaagggcaacacgtgatgggacactgttcatgtggtatgtttc |
7723235 |
T |
|
| Q |
409 |
atggacaaaacaactcattctcaatgttattctcctcctctacaccttatgatcatgaacctgaaacatattgcttcactccgaattcttcatcttcttc |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7723236 |
atggacaaaacaactcattctcaatgttattctcctcctctacaccttatgatcatgaacctgaaacatattgcttcactcctaattcttcatcttcttc |
7723335 |
T |
|
| Q |
509 |
tgttgattgtactctttcacttggaacaccatccactcgtttcagtgaagatgaagagaaaagaacccgacatcatgaacgtcgttctgtcaaaaatttc |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7723336 |
tgttgattgtactctttcacttggaacaccatccactcgtttcactgaagatgaagagaaaagaacccgacatcatgaacgtcgttctgtcaaaaatttc |
7723435 |
T |
|
| Q |
609 |
tgttgggatttgttaacacctaaacagtacaacagtactcagtctcaaacaaaggcaacacgtgcaagtaccaataataacaacaatgattctcttcttg |
708 |
Q |
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| T |
7723436 |
tgttgggatttgttaacacctaaacagtacaacagtactcagtctcaaacaaaggcaacacgtgcaagtaccaataataacaacaatgattctcttcttg |
7723535 |
T |
|
| Q |
709 |
ctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggt-nnnnnnntactctaatatatacattccaa |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
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| T |
7723536 |
ctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggtaaaaaaaatactctaa-atataatataact |
7723634 |
T |
|
| Q |
808 |
atatataactttatttcaatc-tttgatagtttcaatttgaatgggaattacagtcactatgc-atgcatgtgggatcagattca |
890 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
7723635 |
atatataactttatttcaatcttttgatagtttcaatttgaat-ggaattacagtcattatgcaatgcatgtgggatcagattca |
7723718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 690 - 778
Target Start/End: Complemental strand, 32956410 - 32956322
Alignment:
| Q |
690 |
aacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggt |
778 |
Q |
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|||||||||||||||||||||||| | ||||| | ||||||| |||| || ||||| ||||||||||| || ||||| ||||| ||||| |
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| T |
32956410 |
aacaatgattctcttcttgctcgtcgttgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggt |
32956322 |
T |
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