View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5824-Insertion-10 (Length: 781)

Name: NF5824-Insertion-10
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5824-Insertion-10
NF5824-Insertion-10
[»] chr6 (5 HSPs)
chr6 (413-781)||(31786935-31787309)
chr6 (98-364)||(31786620-31786886)
chr6 (736-777)||(31787387-31787428)
chr6 (598-646)||(31787264-31787312)
chr6 (598-646)||(31787387-31787435)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 413 - 781
Target Start/End: Original strand, 31786935 - 31787309
Alignment:
Q  413 gtctagtgtccttgtccatgtccagtacatgatccggtaccaggaagcttctccttaatcttctccatgatccctttcttctcaccatggtgttgctcat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786935 gtctagtgtccttgtccatgtccagtacatgatccggtaccaggaagcttctccttaatcttctccatgatccctttcttctcaccatggtgttgctcat 31787034  T
Q  513 caccatagccagttgttccatgacctgttccagtgcttccatagccagttgttccatgacctgttccagtgcctgtcccataagtattttgttcagtacc 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31787035 caccatagccagttgttccatgacctgttccagtgcttccatagccagttgttccatgacctgttccagtgcctgtcccataagtattttgttcagtacc 31787134  T
Q  613 aggaatcttctccttaatcttgtccataacccctttctctccatgttgttgatgacctacaccactagcaccataaccagttgttccata------tcct 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||    
T  31787135 aggaatcttctccttaatcttgtccataacccctttctctccatgttgttgatgacctacaccactagcaccataaccagttgttccatatcctgttcct 31787234  T
Q  707 gttcctgtccctgtcccatgggtatattgattttgatcagtaccaggaattttctccttaatcttgtccataacc 781  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31787235 gttcctgtccctgtcccatgagtatattgattttgatcagtaccaggaattttctccttaatcttgtccataacc 31787309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 98 - 364
Target Start/End: Original strand, 31786620 - 31786886
Alignment:
Q  98 tttacaatacactttggtgaagtacttcaaatatgtataacttttattactttttaatgaaagaaacttctattacaccactcaaagtaactttacacat 197  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786620 tttacactacactttggtgaagtacttcaaatatgtataacttttattactttttaatgaaagaaacttctattacaccactcaaagtaactttacacat 31786719  T
Q  198 gcccctccactaatacaacatacatattttattcatctatgtatccatcattatacacctcatatatagatacatgaggtgataagatatgttacatacg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786720 gcccctccactaatacaacatacatattttattcatctatgtatccatcattatacacctcatatatagatacatgaggtgataagatatgttacatacg 31786819  T
Q  298 aaccaactcactcaaaaacaaaagtttaaaatacaccaatacacacacatatttattctactgattg 364  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  31786820 aaccaactcactcaaaaacaaaagtttaaaatacatcaatacacacacacatttattctactgattg 31786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 736 - 777
Target Start/End: Original strand, 31787387 - 31787428
Alignment:
Q  736 attttgatcagtaccaggaattttctccttaatcttgtccat 777  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31787387 attttgatcagtaccaggaattttctccttaatcttgtccat 31787428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 598 - 646
Target Start/End: Original strand, 31787264 - 31787312
Alignment:
Q  598 attttgttcagtaccaggaatcttctccttaatcttgtccataacccct 646  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  31787264 attttgatcagtaccaggaattttctccttaatcttgtccataacccct 31787312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 646
Target Start/End: Original strand, 31787387 - 31787435
Alignment:
Q  598 attttgttcagtaccaggaatcttctccttaatcttgtccataacccct 646  Q
    |||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  31787387 attttgatcagtaccaggaattttctccttaatcttgtccattacccct 31787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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