View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-11 (Length: 730)
Name: NF5824-Insertion-11
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-11 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 78 - 730
Target Start/End: Original strand, 51035211 - 51035843
Alignment:
| Q |
78 |
aatttggatacgcaaaagaaaaagggtactcgattcaattcaattcaattcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtca |
177 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51035211 |
aatttggatacgcaaaagaaaaagggta-----ttcaattcaattcaattcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtca |
51035305 |
T |
|
| Q |
178 |
tcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttcaagttcatgaatgtccttcaactctacataacccctagtta |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
51035306 |
tcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttcaagttcgtgagtgtccttcaactctacataacccctagtta |
51035405 |
T |
|
| Q |
278 |
cataactctccacgtaagaggcctccttgaagcctaaccattttgctaccacagagtctactccatcacacccaatcaataccttttccacaaattgcaa |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51035406 |
cataactctccacgtaagaggcctccttgaagcctaaccattttgctaccacagagtttactccatcacacccaatcaataccttttccacaaattgcaa |
51035505 |
T |
|
| Q |
378 |
acaataattattttaattagaccaacaacttgaactctcaatggaagtttttctcttcatatataatgtcttacatattttgttgtttaattaccttagt |
477 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51035506 |
acaataattattttaattagaccaacaacttgaactctcaatggaagt---------------taatgtcttacatattttgttgtttaattaccttagt |
51035590 |
T |
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| Q |
478 |
tttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagt |
577 |
Q |
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| T |
51035591 |
tttgatggttgttccatcagcaagatggagtatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagt |
51035690 |
T |
|
| Q |
578 |
tcattggcaagggcttccaacaataatttccttcgaacttcacaggctcctccactgcatggcataaaaacacacatcatagaaagaattagaataatgg |
677 |
Q |
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| T |
51035691 |
tcattggcaagggcttccaacaataatttccttcgaacttcataggctcctccactgcatggcataaaaacacacatcatagaaagaattagaataatgg |
51035790 |
T |
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| Q |
678 |
aattgtaacaatttataagactatataatatgatcagtgcacttactgttttc |
730 |
Q |
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| T |
51035791 |
aattgtaacaatttataagactatataatatgatcagtgcacttactgttttc |
51035843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 125 - 443
Target Start/End: Original strand, 51031012 - 51031330
Alignment:
| Q |
125 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
224 |
Q |
| |
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|||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | | |
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| T |
51031012 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
51031111 |
T |
|
| Q |
225 |
gaacattggttcaagttcatgaatgtccttcaactctacataacccctagttacataactctccacgtaagaggcctccttgaagcctaaccattttgct |
324 |
Q |
| |
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||||||||||||||| | ||| || |||||||||| ||||||| || ||| |||| ||| | ||| ||||| |||||||| |||||||||||||| |
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| T |
51031112 |
gaacattggttcaaggttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgaggcttccttgaaccctaaccattttgcc |
51031211 |
T |
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| Q |
325 |
accacagagtctactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagaccaacaacttgaactctcaatggaag |
424 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
51031212 |
accacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagactaacaacttgaactctcaaaggaag |
51031311 |
T |
|
| Q |
425 |
tttttctcttcatatataa |
443 |
Q |
| |
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||||| ||||||||||||| |
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| T |
51031312 |
tttttatcttcatatataa |
51031330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 125 - 443
Target Start/End: Original strand, 51063764 - 51064082
Alignment:
| Q |
125 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
224 |
Q |
| |
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|||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | | |
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| T |
51063764 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
51063863 |
T |
|
| Q |
225 |
gaacattggttcaagttcatgaatgtccttcaactctacataacccctagttacataactctccacgtaagaggcctccttgaagcctaaccattttgct |
324 |
Q |
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| T |
51063864 |
gaacattggttcaaggttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgaggcttccttgaaccctaaccattttgcc |
51063963 |
T |
|
| Q |
325 |
accacagagtctactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagaccaacaacttgaactctcaatggaag |
424 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
51063964 |
accacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaattagactaacaacttgaactctcaaaggaag |
51064063 |
T |
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| Q |
425 |
tttttctcttcatatataa |
443 |
Q |
| |
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||||| ||||||||||||| |
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| T |
51064064 |
tttttatcttcatatataa |
51064082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 459 - 610
Target Start/End: Original strand, 51031381 - 51031532
Alignment:
| Q |
459 |
gttgtttaattaccttagttttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatct |
558 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| ||||||| | ||| || || || |||||||| | |||||||||||||||||||||||| || |
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| T |
51031381 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcaatagcaacaacctttgacatgtacct |
51031480 |
T |
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| Q |
559 |
aatggtgccactaggaagttcattggcaagggcttccaacaataatttcctt |
610 |
Q |
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| T |
51031481 |
aatggtgccattgggaagttcattggcaagggcttccaacaataatttcctt |
51031532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 459 - 603
Target Start/End: Original strand, 51064129 - 51064273
Alignment:
| Q |
459 |
gttgtttaattaccttagttttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatct |
558 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| ||||||| | ||| || || || |||||||| | |||||||||||||||||||||||| || |
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| T |
51064129 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcaatagcaacaacctttgacatgtacct |
51064228 |
T |
|
| Q |
559 |
aatggtgccactaggaagttcattggcaagggcttccaacaataa |
603 |
Q |
| |
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| T |
51064229 |
aatggtgccattgggaagttcatttgcaagggcttccaacaataa |
51064273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 468 - 603
Target Start/End: Complemental strand, 40616650 - 40616515
Alignment:
| Q |
468 |
ttaccttagttttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgcc |
567 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||| ||||||| | || |||||||| |||||||||||||||||||||| ||| ||||| ||||| |
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| T |
40616650 |
ttaccttggttttgatggttgttccatcggcaagatggagtatcttaaagaaaccagattcctgaatagcaacaacctttgacaagtacctaatagtgcc |
40616551 |
T |
|
| Q |
568 |
actaggaagttcattggcaagggcttccaacaataa |
603 |
Q |
| |
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||| ||||| ||| | |||||||||||||||||||| |
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| T |
40616550 |
acttggaagctcactagcaagggcttccaacaataa |
40616515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 603
Target Start/End: Original strand, 51069541 - 51069676
Alignment:
| Q |
468 |
ttaccttagttttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgcc |
567 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||| | ||| ||| | || |||||||| | |||||||| || ||||||||||| |||||||||| |
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| T |
51069541 |
ttacctttgttttgatggttgttccatcaacaagatgtagtattttaaagaatccagattcctctatagcaacgacttttgacatgtacctaatggtgct |
51069640 |
T |
|
| Q |
568 |
actaggaagttcattggcaagggcttccaacaataa |
603 |
Q |
| |
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| | |||||||||||| ||||||||||||||||||| |
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| T |
51069641 |
atttggaagttcattgccaagggcttccaacaataa |
51069676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 140 - 364
Target Start/End: Complemental strand, 40616975 - 40616751
Alignment:
| Q |
140 |
taggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttcaag |
239 |
Q |
| |
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||||||| ||||| |||||||| ||| ||| ||| |||| |||||||| ||||||| ||| ||||||||| || ||||| | | ||||||||||||| | |
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| T |
40616975 |
taggagtccatgtaaaaaaccagtaaacacccttctcattacatggaagagctccagctctaaaacctttaccaaagtattgcatgaacattggttccaa |
40616876 |
T |
|
| Q |
240 |
ttcatgaatgtccttcaactctacataacccctagttacataactctccacgtaagaggcctccttgaagcctaaccattttgctaccacagagtctact |
339 |
Q |
| |
|
|||||| || || ||||| ||| ||||| | | |||| ||| | ||||||||||||||||||||||| ||| |||||||||| ||||| ||| |
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| T |
40616875 |
ctcatgattggtctcgcactctgaatagcccctggctgcatatctccctgtgtaagaggcctccttgaagcctagccactttgctaccaaagagttaact |
40616776 |
T |
|
| Q |
340 |
ccatcacacccaatcaatacctttt |
364 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
40616775 |
ccatcacacccgatcaatacctttt |
40616751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 51069396 - 51069463
Alignment:
| Q |
297 |
ggcctccttgaagcctaaccattttgctaccacagagtctactccatcacacccaatcaatacctttt |
364 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||||| | ||||||||| || ||||||||||||| |
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| T |
51069396 |
ggcctccttgaagcctaaccactttgcaaccacagagttgattccatcacatcctatcaatacctttt |
51069463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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