View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824-Insertion-12 (Length: 707)
Name: NF5824-Insertion-12
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Original strand, 202150 - 202700
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
202150 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
202249 |
T |
|
| Q |
108 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaatt-atgattttcttttgcttag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
202250 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaatttatgattttcttttgcttag |
202349 |
T |
|
| Q |
207 |
atccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
202350 |
atccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaa |
202449 |
T |
|
| Q |
307 |
tctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttactt |
406 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
202450 |
tctttgctcgagacatgttgtttttgatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgatgattgaaccttttactt |
202549 |
T |
|
| Q |
407 |
gatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcat |
506 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
202550 |
gatgctctgtgtaagagaatattatttagctgtttgatattgcttgttttgatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcat |
202649 |
T |
|
| Q |
507 |
tgattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
202650 |
tgattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag |
202700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 206949 - 206482
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
206949 |
aggcaggttgtgaacatcccatccttcatggtaagggttgattcacagaagcacattgacttttcactcacaagtccattcggtggtggtcttcctggtc |
206850 |
T |
|
| Q |
108 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcttttgcttaga |
207 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
206849 |
gtgtgaagcgtaagaaccttaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcattttcttaga |
206750 |
T |
|
| Q |
208 |
tccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
206749 |
tccttgctctagcctttttatatctgtcctagactttagattttctatcatgcaaatgacttttaccgttttcccatccctgtttattgtgtgaggaaat |
206650 |
T |
|
| Q |
308 |
ctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacattt-gatgatctttgtgataattgaaccttttactt |
406 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
206649 |
ctttgcttgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttaaatgatctttgttataattgaaccttttactt |
206550 |
T |
|
| Q |
407 |
gatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtat |
474 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
206549 |
gatggtgtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtatatccgtgtat |
206482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 591 - 707
Target Start/End: Original strand, 202737 - 202853
Alignment:
| Q |
591 |
ttgattctaaattaaggaaggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggatta |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
202737 |
ttgattctaaattaaggaaggaaatatgtttgattctaaattctaaagttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggatta |
202836 |
T |
|
| Q |
691 |
atggagactttatcatt |
707 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
202837 |
atggagactttatcatt |
202853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Complemental strand, 6908835 - 6908287
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6908835 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
6908736 |
T |
|
| Q |
108 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcttttgcttaga |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6908735 |
gtgtgaaacgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcttttgcttaga |
6908636 |
T |
|
| Q |
208 |
tccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6908635 |
tccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaat |
6908536 |
T |
|
| Q |
308 |
ctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttg |
407 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6908535 |
ctttgctcaagacatgttgtttttgatcttttcttttctaagtatt-agttttgctccaatacatttgatgatctttgtgataattgaactttttacttg |
6908437 |
T |
|
| Q |
408 |
atgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcatt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6908436 |
atgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcatt |
6908337 |
T |
|
| Q |
508 |
gattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6908336 |
gattgaagcatagttgattttgaatattagtttgattatgtgtgtaagag |
6908287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Complemental strand, 44924808 - 44924311
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44924808 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
44924709 |
T |
|
| Q |
108 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcttttgcttaga |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44924708 |
gtgtgaagtgaaagaacttaaaggctgcagccaagaaggcttccggtggtgacggtgatgaggaggatgaagattaaattatgatttcattttgcttaga |
44924609 |
T |
|
| Q |
208 |
tccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44924608 |
tccttgctctagcctttttatatctgtcctagactttagattttctatcatgcaaatgacttttaccatttt-ccatccctgtttattgtgtgaggaaat |
44924510 |
T |
|
| Q |
308 |
ctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttg |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44924509 |
ctttgctcgagacatgttgttttttatcctttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttg |
44924410 |
T |
|
| Q |
408 |
atgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcat |
506 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44924409 |
atgctgcgtgtaagagaatattatttagctgtttgatattgcttattttgatggtatacctgtgtatccaaccgaaactttgatccaactatgcttcat |
44924311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 6901440 - 6901692
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
107 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
6901440 |
aggcaggttgttaacatcccatccttcatggtaagggttgattcacagaagcacattgacttttcactcacaagtccattcggtggtggtcttcctggtc |
6901539 |
T |
|
| Q |
108 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcttttgcttaga |
207 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
6901540 |
gtgtgaagcgtaagaaccttaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcattttcttaga |
6901639 |
T |
|
| Q |
208 |
tccttgctctagcctttttatatctgccctagactttagattttctgtcatgc |
260 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
6901640 |
tccttgctctcgcctttttatatctgtcctagactttagattttctatcatgc |
6901692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 44927258 - 44927080
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
107 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||| |
|
|
| T |
44927258 |
aggcaggttgttaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttccctcacaagtccctttggtggtggtcttcctggtc |
44927159 |
T |
|
| Q |
108 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaat |
186 |
Q |
| |
|
| |||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44927158 |
gcgtgaagtgaaagaaccttaaggctgcagccaagaaggcttccggtggtgatggagatgaggaggatgaagattaaat |
44927080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 314 - 474
Target Start/End: Original strand, 6901694 - 6901855
Alignment:
| Q |
314 |
tcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga-tgatctttgtgataattgaaccttttacttgatgct |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
6901694 |
tcgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttgaattatctttgttataattgaaccttttacctgatggt |
6901793 |
T |
|
| Q |
413 |
gtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtat |
474 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
6901794 |
gtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtatatccgtgtat |
6901855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 609 - 707
Target Start/End: Complemental strand, 6908223 - 6908125
Alignment:
| Q |
609 |
aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggattaatggagactttatcatt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6908223 |
aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggattaatggagactttatcatt |
6908125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 619
Target Start/End: Complemental strand, 6908253 - 6908225
Alignment:
| Q |
591 |
ttgattctaaattaaggaaggaaatatgt |
619 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6908253 |
ttgattctaaattaaggaaggaaatatgt |
6908225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 44927053 - 44926961
Alignment:
| Q |
94 |
tggtcttcctggtcgtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaat |
186 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| | |||||||| | ||||||| ||||||||||||| || |||||||||||||| |||| |
|
|
| T |
44927053 |
tggtcatcctggtcgcgtgaagttaaagaaccttaaggctgctacttagaaggcgtccggtggtgatgaagacaaggaggatgaagataaaat |
44926961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 24652667 - 24653035
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
24652667 |
aggcaggttgtgaacatcccatccttcatggtaagggttgattcacagaagcacattgacttttcactcacaagtccattcggtggtggtcttcctggtc |
24652766 |
T |
|
| Q |
108 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcttttgcttaga |
207 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
24652767 |
gtgtgaagcgtaagaaccttaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcattttcttaga |
24652866 |
T |
|
| Q |
208 |
tccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24652867 |
tccttgctctagcctttttatatctgtcctagactttagattttctatcatgcaaatgacttttaccgttttcccatccctgtttattgtgtgaggaaat |
24652966 |
T |
|
| Q |
308 |
ctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga |
376 |
Q |
| |
|
|||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24652967 |
ctttgctcaaaacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttga |
24653035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 449
Target Start/End: Original strand, 29514343 - 29514790
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatggtgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctggtc |
107 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
29514343 |
aggcaggttgtgaacatcccatcattcatggtgagggttgattcacagaagcacattgacttttcactcacaagtccttttggtggtggtcttcccggtc |
29514442 |
T |
|
| Q |
108 |
gtgtgaagcgaaagaacttaaaggctgcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaa------attatgattttcttttg |
201 |
Q |
| |
|
| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29514443 |
gcgtgaagcgaaagaaccttaaggctgcagccaagaaggcttctggtggtgatggtgatgaggaggatgaagattaaatttaaattatgattttcttttg |
29514542 |
T |
|
| Q |
202 |
cttagatccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtga |
301 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||| || |
|
|
| T |
29514543 |
cttagatccttgctctagcctcttgatatctgtcctagactttagattttctatcatgcatatgacttttaccattttcctatccttgtttattgtgcga |
29514642 |
T |
|
| Q |
302 |
ggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttt |
401 |
Q |
| |
|
| |||||||||||||||| ||||| ||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29514643 |
gtaaatctttgctcgagagatgttctttttgagcttttcttttccaagtatagagttttgctccaatacatttgatgatctttatgataattgaaccttt |
29514742 |
T |
|
| Q |
402 |
tacttgatgctgtgtgtaagagaatattatttagctgtttgatattgc |
449 |
Q |
| |
|
||||| ||| || |||| ||| |||||||||||| ||||||| |||| |
|
|
| T |
29514743 |
tacttaatggagtttgtatgagtatattatttagcagtttgattttgc |
29514790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 43626050 - 43626417
Alignment:
| Q |
8 |
aggcaggtggtgaacatcccatccttcatgg--tgagggttgattcacagaagcacattgacttttcactcacaagtcctttcggcggtggtcttcctgg |
105 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
43626050 |
aggcaggttgttaacatcccatccttcatggggtgagggttgattcacagaagcacattgacttttcactcacaagtccttttggtggttgtcttcctgg |
43626149 |
T |
|
| Q |
106 |
tcgtgtgaagcgaaagaacttaaaggct-gcagccaagaaggcttccggtggtgatggtgatgaggaggatgaagattaaattatgattttcttttgctt |
204 |
Q |
| |
|
||||||||||||||||||| | ||| || |||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
43626150 |
tcgtgtgaagcgaaagaaccttaagactggcagccaagaaggcttccggtggtcatgttgacgaggaggatgaaggttaaattatgattttcttttactt |
43626249 |
T |
|
| Q |
205 |
agatccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgacttttacca-ttttcccatccctgtttattgtgtgagg |
303 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||| ||||||||||||| ||||| ||||| |||||||||||| ||| |
|
|
| T |
43626250 |
agatccttgctctagcctttt--tatctgtcctagactttagattttctatgatgcatatgacttttaccatttttctcatccttgtttattgtgtaagg |
43626347 |
T |
|
| Q |
304 |
aaatctttgctc-gagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacat |
372 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| |||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
43626348 |
aaatcttttctcagagacgtgttgttttttatctcttcttttccaaatattaagttttgctccaatacat |
43626417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 170 - 327
Target Start/End: Complemental strand, 43998065 - 43997909
Alignment:
| Q |
170 |
gaggatgaagattaaattatgattttcttttgcttagatccttgctctagcctttttatatctgccctagactttagattttctgtcatgcaaatgactt |
269 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
43998065 |
gaggatgaaggttaaattatgattttcttttgcttagatccttgctctagcctttttag--ctgtcctagactttagattttctatgatgcatatgactt |
43997968 |
T |
|
| Q |
270 |
ttaccattttcccatccctgtttattgtgtgaggaaatctttgctc-gagacatgttgt |
327 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
43997967 |
ttaccattttcccatccttgtttattgtgtgaggaaatcttttctcagagacgtgttgt |
43997909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 376 - 480
Target Start/End: Original strand, 43632255 - 43632354
Alignment:
| Q |
376 |
atgatctttgtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatc |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||| | || ||||| ||||||| |||| | |||| |||||||||||||||||| |
|
|
| T |
43632255 |
atgatctttgtgataattgaaccttttacttgatgttgtatgtaag-----aatagttagcagtttgattttgcatattttgatggtatacccgtgtatc |
43632349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 506
Target Start/End: Complemental strand, 43997903 - 43997814
Alignment:
| Q |
422 |
agaatattatttagctgtttgatattgcttgtttttatggtata-cccgtgtat----ccaaccgaaactttgatccaactatgcttcat |
506 |
Q |
| |
|
||||||||||||||| ||||||| |||| | |||| |||||||| ||||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
43997903 |
agaatattatttagcagtttgattttgcatattttgatggtataccccgtgtatccaaccaaccaaaactttgaatcaactatgcttcat |
43997814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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