View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-15 (Length: 426)
Name: NF5824-Insertion-15
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 1792276 - 1792691
Alignment:
| Q |
8 |
atcatctttgcctttaaaagtaagtactcaagtctttacaatcccacatctctctaagtacgcttctcattaccattttcgtgaaaaccaaacatattga |
107 |
Q |
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| T |
1792276 |
atcatctttgcctttaaaagta----ctcaagtctctacaatcccacatctctctaagtacgcttctcattaccattttcgtgaaaaccaaacatattga |
1792371 |
T |
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| Q |
108 |
tgttgaagaatattgaaaagcacttccccaaattgacctgaaataaaacacnnnnnnnggttgcataatttatgcaaaaactcacaattcccataaggca |
207 |
Q |
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| T |
1792372 |
tgttgaagaatattgaaaagcacttccctaaattgacctgaaataaaacacaaaaaaaggttgcataatttatgcaaaaactcacaattcccataaggca |
1792471 |
T |
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| Q |
208 |
tgaaactttgcaaaaaaggcatggaagcttatacaaatttgcataacacttaagtacgaaaatgataaagatatcattgaatcacac-nnnnnnngtctt |
306 |
Q |
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| T |
1792472 |
tgaaactttgcaaaaaaggcatggaagcttatacaaatttgcataacacttaagtacgaaaatgataaagatatcattgaatcacacttttttttgtctt |
1792571 |
T |
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| Q |
307 |
ttattcttgggactttcttaatcgttgtcaaatttagaggaaaacatgggtaaacgtggcaatgacaaaacccttggctcaaagaatgtgcaaaacacaa |
406 |
Q |
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| T |
1792572 |
ttattcttgggactttcttaatcgttgtcaaatttagaggaaaacatgggtaaacgtggcaatgacaaaacccttggttcaaagaatgtgcaaaacacaa |
1792671 |
T |
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| Q |
407 |
ataactccttgtgcttcacc |
426 |
Q |
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| T |
1792672 |
ataactccttgtgcttcacc |
1792691 |
T |
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