View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-17 (Length: 375)
Name: NF5824-Insertion-17
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 375
Target Start/End: Complemental strand, 31023900 - 31023532
Alignment:
| Q |
9 |
tagagcccgtaaagtaatttgttctttagggaacgtggtaactactttgaccgagaaaacattttaaccaggattgtgacaatggaattactatttcctc |
108 |
Q |
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| T |
31023900 |
tagagcccgtaaagtaatctgttccttagggaacatggtaactactttgaccgagaaaacattttaaccaggatagtgacaatggaattactatttcctc |
31023801 |
T |
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| Q |
109 |
tgtgcctaagatccttttttacatgcctaaaatcatgttcaaaccgaggaattttacctcctaatttatctcacactctagtttgtgagttaggactcac |
208 |
Q |
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| T |
31023800 |
tatgcctaagatccttttttacatgcctaaaatcatgttcaaaccgaggaattttacctcctaatttatctcacactctagtttgtgagttaggactcac |
31023701 |
T |
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| Q |
209 |
ttcaaagtcttgcaaac--tgtcattctctttaaacccgctaagttttgatttgggctcctcatatggcataatttttaatgcaacacgtgaaccaccac |
306 |
Q |
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| T |
31023700 |
ttcaaagtcttgcaaactgtgtcattctctttaaacccgctaagttttgatttgggctcctcatatggcataatttttaatgcaacacatgaaccaccac |
31023601 |
T |
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| Q |
307 |
tcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttgcatttacattagcttttt |
375 |
Q |
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| T |
31023600 |
tcctagaatctttatctttgatgatctcatcaaaattaataaattttcttgcatttacattagcttttt |
31023532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 35213972 - 35213886
Alignment:
| Q |
278 |
aatttttaatgcaacacgtgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttgcatttac |
364 |
Q |
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| T |
35213972 |
aattttttatgcaacatttgaaacaccactcctagaatctttatctaaaatgacctcatcaatatttataaatttccttgcatttac |
35213886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 20402539 - 20402473
Alignment:
| Q |
286 |
atgcaacacgtgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattt |
352 |
Q |
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| T |
20402539 |
atgcaacacgtgaaccaccagtcctagaatctttatgtataatgacctcaccaatattaataaattt |
20402473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 43396706 - 43396625
Alignment:
| Q |
281 |
ttttaatgcaacacgtgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttgcatttac |
364 |
Q |
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| T |
43396706 |
ttttaatgcaacacgttaatcaccattcctagaatatttatcta--atgacctcatcaatattaataaatttacctgcatttac |
43396625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 48038581 - 48038513
Alignment:
| Q |
296 |
tgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttgcatttac |
364 |
Q |
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| T |
48038581 |
tgaaccaccactcataaaatctttatatataatgacctcatcaacattaataagtttacttgtatttac |
48038513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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