View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-18 (Length: 301)
Name: NF5824-Insertion-18
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 41874655 - 41874944
Alignment:
| Q |
9 |
gtatgtgggttttctctttgttttcctaagtgccggttattttatttgattgtgcttgcctaagtggcggaaattatatttttactatcatcatgcattt |
108 |
Q |
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| T |
41874655 |
gtatgtgagttttctctttgttttcctaagtgccggttattttatttgattgtggttgcctaagtggcagaaattatatttttactatcatcatgcattt |
41874754 |
T |
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| Q |
109 |
cctatgtgatgccttattggcggacaaatctcttttcatcattatgacatgacatgtgcatattttgtgtgatgcatgtgtctgcgggttaaatattatg |
208 |
Q |
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| T |
41874755 |
cctatgtgatgccttattggcggacaaatctcttttcatcattatggcatgacatgtgcatattttgtgtgatgcatgtc---gtgggttaaatattatg |
41874851 |
T |
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| Q |
209 |
tgtgatgtcttagtggcgggttgaccttgtctgaatcatttagttctcatgagcatgcatcttacgcataattgcattcgaatccattatatt |
301 |
Q |
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| T |
41874852 |
tgtgatgtcttagtggcgggttgaccttatctggatcatttagttctcaggagcatgcatcttacgcataattgcatttgaatccattatatt |
41874944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 300
Target Start/End: Complemental strand, 9554957 - 9554727
Alignment:
| Q |
67 |
cctaagtggcggaaattatatttttactatcatcatgcatttcctatgtgatgccttattggcggacaaatctcttttcatcattatgacatgacatgtg |
166 |
Q |
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| T |
9554957 |
cctaagtggtgggaattatgtttt-attatcattatgcattttctatgcgatgtctttgtgacgggtaaatttcttttcatcatcatg-catgacatgtg |
9554860 |
T |
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| Q |
167 |
catattttgtgtgatgcatgtgtctgcgggttaaatattatgtgtgatgtcttagtggcgggttgaccttgtctgaatcatttagttctcatgagcatgc |
266 |
Q |
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| T |
9554859 |
tatattgtgtgtgatgcatgtgtg-gcgggttaaatattatgtgcgatgctttagtggcgggatgactatatccagatcatttagttatcaggaacatgc |
9554761 |
T |
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| Q |
267 |
atcttacgcataattgcattcgaatccattatat |
300 |
Q |
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| T |
9554760 |
atcttatacataattgcatttaaatccattatat |
9554727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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