View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-19 (Length: 295)
Name: NF5824-Insertion-19
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-19 |
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| [»] scaffold0830 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 5079599 - 5079317
Alignment:
| Q |
9 |
gtatcttctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaactgcttcattagtaaaaatcaaga |
108 |
Q |
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| T |
5079599 |
gtatcctctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaactgcatcattagtaaaaatcaaga |
5079500 |
T |
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| Q |
109 |
ccttattcactcaatgagggnnnnnnnnntcaagaaataaaagtatatagtgatttataaatctcacattaccttatactttgaagactctctttgtttc |
208 |
Q |
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| T |
5079499 |
ccttattcactcaatgagggaaaaaaaaatctagaaataaaagtatatagtgatttataaatctcacattaccttatactttgaagactctctttgtttc |
5079400 |
T |
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| Q |
209 |
tgtatattcccaataatttttgaatctatatgtaatacaaaatatttttcaatcccatattgcatggaactgttattctctac |
291 |
Q |
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| T |
5079399 |
tgtatattcccaataatttttgaatctatatgtaatacaaaatatttttcaatcccatattgtatggaactgttattctctac |
5079317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 5102690 - 5102750
Alignment:
| Q |
26 |
tttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaact |
86 |
Q |
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| T |
5102690 |
tttagcattgagatgttgtgaagattcacctgaggctcggattaatatgacagatgtaact |
5102750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 5120315 - 5120400
Alignment:
| Q |
26 |
tttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaactgcttcattagtaaaaatcaagacct |
111 |
Q |
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| T |
5120315 |
tttagcattgagatgctgtgaagattcacctgaggctcggattaatatgacagatgcaactacctcgttaatcaagatcaagacct |
5120400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 16886955 - 16887063
Alignment:
| Q |
9 |
gtatcttctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaactgcttcattagtaaaaatcaaga |
108 |
Q |
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| T |
16886955 |
gtatcatctgttttggatttagcattgagatgttgtgcagattcaccagaagcaaggattagtatggcagatgtaactgcatcactaatcaaaatcaaga |
16887054 |
T |
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| Q |
109 |
ccttattca |
117 |
Q |
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| T |
16887055 |
tcttattca |
16887063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 25475011 - 25474944
Alignment:
| Q |
15 |
tctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgt |
82 |
Q |
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| T |
25475011 |
tctatttttggtttagccctcagttgttgtgaagatttacctaaagcaagaattaatatggcagatgt |
25474944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 25604373 - 25604279
Alignment:
| Q |
15 |
tctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaactgcttcattagtaaaaatcaagac |
109 |
Q |
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| T |
25604373 |
tctatttttagtttagctctgagttgttgtgaagattcacctgaagcaagaatcaatatggcagaagttattgcttcactaatcaaaatcaagac |
25604279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 4833 - 4927
Alignment:
| Q |
15 |
tctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaactgcttcattagtaaaaatcaagac |
109 |
Q |
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| T |
4833 |
tctatttttggtttagctttgaattgttgcgaatattcaccggaagcaagaattaatatgacagatgttattgcgtcgctaataaaaatcaagac |
4927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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