View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5824-Insertion-2 (Length: 992)

Name: NF5824-Insertion-2
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5824-Insertion-2
NF5824-Insertion-2
[»] chr8 (2 HSPs)
chr8 (8-731)||(42703535-42704258)
chr8 (836-897)||(42704597-42704658)
[»] chr1 (2 HSPs)
chr1 (622-717)||(23527261-23527357)
chr1 (746-801)||(43492211-43492265)
[»] chr7 (2 HSPs)
chr7 (621-717)||(30833445-30833541)
chr7 (764-801)||(26402864-26402900)
[»] chr3 (1 HSPs)
chr3 (753-801)||(32734658-32734705)
[»] chr6 (2 HSPs)
chr6 (686-717)||(29301714-29301745)
chr6 (746-801)||(29407973-29408027)
[»] chr4 (3 HSPs)
chr4 (746-801)||(28695736-28695790)
chr4 (650-717)||(43921091-43921158)
chr4 (632-717)||(34701207-34701292)
[»] chr2 (1 HSPs)
chr2 (621-671)||(39955479-39955529)


Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 731
Target Start/End: Original strand, 42703535 - 42704258
Alignment:
Q  8 accagtaacacggtgcctcaaccaagaagaaaacccatctaacctaaactctttgtaccctctatcaggaacaacatagcttccatcaggtctagtaaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42703535 accagtaacacggtgcctcaaccaagaagaaaacccatctaacctaaactctttgtaccctctatcaggaacaacatagcttccatcaggtctagtaaca 42703634  T
Q  108 acgaaggcgaaaacgaggatgatgagtagaagagcgattaaaagtgccatagcaaaaaggtaaagtgctaagagaccttctttgttataataagcaccta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42703635 acgaaggcgaaaacgaggatgatgagtagaagagcgattaaaagtgccatagcaaaaaggtaaagtgctaagagaccttctttgttataataagcaccta 42703734  T
Q  208 caaaaccagttaaagcaacgaggaagacaaggatgccgactatgacaatgggccatcggaaattggctatgcattcgttgtctggttttgaagctagcca 307  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42703735 taaaaccagttaaagcaacgaggaagacaaggatgccgattatgacaatgggccatcggaaattggctatgcattcgttgtctggttttgaagctagcca 42703834  T
Q  308 aattcctgaagctatgattggtattgaggctaatattgctatgatgtttagaactgcggttatgttgttgcttacacccatcacaggtatcagttaccac 407  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42703835 aattccggaagctatgattggtattgaggctaatattgctatgatgtttagaactgcggttatattgttgcttacacccatcacaggtatcagttaccac 42703934  T
Q  408 tgcctttgttttgctatatttgagttttggtgaaagtgctgaatttgagcagagtgcagatagattgagaggaaagggaccatgggcacgttgctcatgg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42703935 tgcctttgttttgctatatttgagttttggtgaaagtgctgaatttgagcagagtgtagatagattgagaggaaagggaccatgggcacgttgctcatgg 42704034  T
Q  508 ac-tccgtccgtctgtctctatttatgtttgttgtttttggggggcttaatcgtaattccctccatatagttttattttattttcttttgaaagnnnnnn 606  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||          
T  42704035 acttccgtccgtc-gtctctatttatgtttgttgtttttggggggcttaatcgtaattcgctccatatagttttattttactttcttttgaaagaaaaaa 42704133  T
Q  607 nnnnnnnnnnnnnnctttatctttaaaattgtacctgcaatatattgaaataataaaaagtaacttttttcatatataattcatcaatcatttttaattt 706  Q
                  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42704134 ataaaaaataaaaactttatctttaaaattgtatctgcaatatattgaaataataaaaagtaactttttccatatataattcatcaatcatttttaattt 42704233  T
Q  707 tgaatccttaattagcatgatctat 731  Q
    |||||||||||||||||||||||||    
T  42704234 tgaatccttaattagcatgatctat 42704258  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 836 - 897
Target Start/End: Original strand, 42704597 - 42704658
Alignment:
Q  836 tagatgtttatctttttgcttttcaagttgtccacgacagaatcaagttcgaaatttacgta 897  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  42704597 tagatgtttatctttttacttttcaagttgtccacggcagaatcaagttcgaaatttacgta 42704658  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 622 - 717
Target Start/End: Original strand, 23527261 - 23527357
Alignment:
Q  622 tttatctttaaaattgtacctgcaatatattgaaataataaaaagtaacttttttcat-atataattcatcaatcatttttaattttgaatccttaa 717  Q
    |||||||| |||||||||| | |||||||||||||||| ||||||||| ||||||  |  || | |||||||||||||||||||||| |||| ||||    
T  23527261 tttatcttgaaaattgtacattcaatatattgaaataacaaaaagtaattttttttttcgtaaatttcatcaatcatttttaattttaaatctttaa 23527357  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 746 - 801
Target Start/End: Complemental strand, 43492265 - 43492211
Alignment:
Q  746 gtcttggtaacaagtgcactaagggcactcttttaaggattcctaataaagaaatt 801  Q
    |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  43492265 gtcttgttaacgagtgccctaagggcactcttt-aaggattcctaataaagaaatt 43492211  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 621 - 717
Target Start/End: Original strand, 30833445 - 30833541
Alignment:
Q  621 ctttatctttaaaattgtacctgcaatatattgaaataataaaaagtaacttttttcatatataattcatcaatcatttttaattttgaatccttaa 717  Q
    ||||||||| |||||||| | | ||| | |||||||||| |||||||||| ||||  || || | ||||| |||| ||| |||||||||||||||||    
T  30833445 ctttatcttgaaaattgtgcattcaacacattgaaataacaaaaagtaacattttatatctaaatttcatgaatcttttctaattttgaatccttaa 30833541  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 801
Target Start/End: Complemental strand, 26402900 - 26402864
Alignment:
Q  764 ctaagggcactcttttaaggattcctaataaagaaatt 801  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  26402900 ctaagggcactcttt-aaggattcctaataaagaaatt 26402864  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 753 - 801
Target Start/End: Original strand, 32734658 - 32734705
Alignment:
Q  753 taacaagtgcactaagggcactcttttaaggattcctaataaagaaatt 801  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  32734658 taacgagtgccctaagggcactcttt-aaggattcctaataaagaaatt 32734705  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 717
Target Start/End: Complemental strand, 29301745 - 29301714
Alignment:
Q  686 ttcatcaatcatttttaattttgaatccttaa 717  Q
    ||||||||||||||||||||||||||||||||    
T  29301745 ttcatcaatcatttttaattttgaatccttaa 29301714  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 801
Target Start/End: Original strand, 29407973 - 29408027
Alignment:
Q  746 gtcttggtaacaagtgcactaagggcactcttttaaggattcctaataaagaaatt 801  Q
    |||||| |||| |||||  |||||||||||||| ||||||||||||||||||||||    
T  29407973 gtcttgttaacgagtgccttaagggcactcttt-aaggattcctaataaagaaatt 29408027  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 801
Target Start/End: Original strand, 28695736 - 28695790
Alignment:
Q  746 gtcttggtaacaagtgcactaagggcactcttttaaggattcctaataaagaaatt 801  Q
    |||||| |||| ||||| |||||||||||| |||||||||| ||||||||||||||    
T  28695736 gtcttgttaacgagtgccctaagggcactc-tttaaggattactaataaagaaatt 28695790  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 717
Target Start/End: Complemental strand, 43921158 - 43921091
Alignment:
Q  650 attgaaataataaaaagtaacttttttcatatataattcatcaatcatttttaattttgaatccttaa 717  Q
    ||||||| || |||||||||||||||  | ||| ||||||| |||||||| || ||||||||||||||    
T  43921158 attgaaagaacaaaaagtaactttttcaacataaaattcatgaatcatttctagttttgaatccttaa 43921091  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 717
Target Start/End: Complemental strand, 34701292 - 34701207
Alignment:
Q  632 aaattgtacctgcaatatattgaaataataaaaagtaacttttttcatatataattcatcaatcatttttaattttgaatccttaa 717  Q
    ||||||||| | ||| | ||| ||| || |||| ||||||||||  | ||| || ||||||||||||| |||||||||||||||||    
T  34701292 aaattgtacattcaacaaattaaaacaacaaaaggtaactttttctacataaaactcatcaatcatttctaattttgaatccttaa 34701207  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 621 - 671
Target Start/End: Complemental strand, 39955529 - 39955479
Alignment:
Q  621 ctttatctttaaaattgtacctgcaatatattgaaataataaaaagtaact 671  Q
    |||||||||||||||||| | | ||| ||||| ||||||||||||||||||    
T  39955529 ctttatctttaaaattgtgcattcaacatattaaaataataaaaagtaact 39955479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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