View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-3 (Length: 954)
Name: NF5824-Insertion-3
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Complemental strand, 121310 - 120768
Alignment:
| Q |
9 |
cttcgtcctggtttcttaccttcatgcccgatatcagttgcatcttttgaagatcctcacttgaaaacgattcctcaacaatattggaaagccattccag |
108 |
Q |
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| T |
121310 |
cttcgtcctggtttcttaccttcatgcccgatatcagttgcatcttttgaagatcctcacttgaaaacgattcctcaacaatattggaaagccattccag |
121211 |
T |
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| Q |
109 |
gtcgcccgctaaatcatcctcctatttcaaatttcaacacaaacaataattattcctcnnnnnnnnnnnnnnngctcttgaaacattatttgctacgtag |
208 |
Q |
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| T |
121210 |
gtcgcccgctaaatcatcctcctatttcaaatttcaacacaaacaataattattcctctatatat--------gctcttgaaacattatttgctacgtag |
121119 |
T |
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| Q |
209 |
taataataatattacattgtacataagtaatcaa-gcatacacattttatgttcatagtcatactattgctttcacgtgtactattttgtgatactcaat |
307 |
Q |
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| T |
121118 |
taataataatattacattgtacataagtaatcaaagcatacacattttatgttcatagtcatactattgctttcacgtgtactattttgtgatactcaat |
121019 |
T |
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| Q |
308 |
aatttggtaataattgaaacaaaagttgcaataaaatttagttttcgaaccgtgaaatgtgccccattctgttgtgtttagcctagctagttgttttttc |
407 |
Q |
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| T |
121018 |
aatttggtaataattgaaacaaaagttgcaataaaatttagttttcgaaccgtgaaatgtgccccattctgttgtgtttagcctagctagttgttttttc |
120919 |
T |
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| Q |
408 |
tcctgaaattattggcaaaaaagggttcaaaatcttcaaatggaatgtgatgttattatatgttatacgtgcatgagttagaaattttcatggaactaat |
507 |
Q |
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| T |
120918 |
tcctgaaattattggcaagaaagggttcaaaatcttcaaatggaatgtgatgttattatatgttatacgtgcatgagttagaaattttcatggaactaat |
120819 |
T |
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| Q |
508 |
agaaaaagtcaaattaaatgagctacgaaattgtgaagtgtctatgtgctt |
558 |
Q |
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| T |
120818 |
agaaaaagtcaaattaaatgagctacgaaattgtgaagtgtctgtgtgctt |
120768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 617 - 852
Target Start/End: Complemental strand, 120707 - 120472
Alignment:
| Q |
617 |
ccggaacacacaggtctccggagaaatggctgtcagaaaaattctgacagccaatatcaggaacgacattagggtcgcacccggacaatgatgaggggct |
716 |
Q |
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| T |
120707 |
ccggaatacacaggtctccggagaaatggctgtcagaaaaattctgacagccaatatcaggaacgacattagggtcgcacccggacaatgacgacgggct |
120608 |
T |
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| Q |
717 |
aacgctattgacgacggtaagggtggaggaggaggcggttgagttgcccgtagccgagtcaaggttggtgtcggaaatgatggtagtgtcgtcgtcgatg |
816 |
Q |
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| T |
120607 |
aacgctattgacgacggtaagggtggaggaggaggcagttgagttgcccgtggccgagtcaaggttggtgtcggaaatgatggtagtgtcgtcgtcgatg |
120508 |
T |
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| Q |
817 |
tcattgttgaggttaaggaggtcctcaacaatgaaa |
852 |
Q |
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| T |
120507 |
tcattgttgaggttaaggaggtcctcaacaatgaaa |
120472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 917 - 953
Target Start/End: Complemental strand, 120406 - 120369
Alignment:
| Q |
917 |
gccttccattcctacgta-ggaatgtagttttaagaat |
953 |
Q |
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| T |
120406 |
gccttccattcctacgtagggaatgtagttttaagaat |
120369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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