View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-4 (Length: 935)
Name: NF5824-Insertion-4
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 9422429 - 9422158
Alignment:
| Q |
9 |
cgaatcctatggcacggttgaacataagagaataagctgattctttgataggacgatcagcaaagacagagctatggagaatctctttagcaacatctgg |
108 |
Q |
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| T |
9422429 |
cgaatcctatggcacggttgaacataagagaataagctgattctttgataggacgatcagcaaagacagagctatggagaatttctttagcaacatctgg |
9422330 |
T |
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| Q |
109 |
attgcaagtaactatggctcttgtgtcaccaagactaaaagccatgagtcttgttgctttgcatgtttttgctgtggaagctatacggtggtgtgctagt |
208 |
Q |
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| T |
9422329 |
attgcaagtaaccatggctcttgtgtcaccaagactaaaagccatgagtcttgttgctttgcatgtttttgctgtggaagctatacggtggtgtgctagt |
9422230 |
T |
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| Q |
209 |
gatgaagacataagattcatgcttccaaatagaggatacccttttggaccaggaatgaatattgaagaggaa |
280 |
Q |
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| T |
9422229 |
gatgaagacataagattcatgcttccaaatagaggatacccttttggaccaggaatgaatattgaagaggaa |
9422158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 669 - 933
Target Start/End: Complemental strand, 9421777 - 9421509
Alignment:
| Q |
669 |
gttgaaatgaaaatgatatcataaccgttatagttatgtaatgtaaacatactttacacatgagattaaaatactctactaggaccgtatataacggata |
768 |
Q |
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| T |
9421777 |
gttgaaatgaaaatgaaatcataaccgttatagttatgtaatgtaaacatactttacacatgagattaaaatactctactaggaccgtatgtaacggata |
9421678 |
T |
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| Q |
769 |
aataataggtattatggttattaattggtggtaatgattttgtttagtgg---ggggagataaataaatgggtaagttttaatttttgttgtttttggac |
865 |
Q |
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| T |
9421677 |
aataataggtattatggttattaattggtggtaatgattttgtttagtgggggggggagataaataaatgggtaagttttaatttttgttgtttttggag |
9421578 |
T |
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| Q |
866 |
aaatcattggagctccgccgccacgaatgcatgacgaaatcttggaaaagtatgct-ctataaagtttt |
933 |
Q |
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| T |
9421577 |
aaatcattggagctccgccgccacgaatgcatgacgaaatcttggaaaagtatgctcctataaagtttt |
9421509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 340 - 524
Target Start/End: Complemental strand, 9422101 - 9421917
Alignment:
| Q |
340 |
ggtggaatagttagaggaataatagtacttgccccaagcaggaccaccagggtgagaccaataaaagaaagtcatggttatccaaagtaaagccatgatc |
439 |
Q |
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| T |
9422101 |
ggtggaatagttagaggaataatagtacttgccccaagcaggaccaccagggtgagaccaataaaagaaagtcatggttatccaaagtaaagccatgatc |
9422002 |
T |
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| Q |
440 |
aaaagagagtaagcaatgttttcttgtgtgcatttggaagcaagagcaaaaatccagagggtatcaatgttggttgacatgtttc |
524 |
Q |
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| T |
9422001 |
aaaagagagtaagcaatgttttcttgtgtgcatttggaagcaagagcaaaaatccagaggttgtcaatgttggttgacatgtttc |
9421917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 591 - 639
Target Start/End: Complemental strand, 9421855 - 9421807
Alignment:
| Q |
591 |
tgtggtgaggtgagtaagtaagaggttggttgaggggaatatatatagg |
639 |
Q |
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| T |
9421855 |
tgtggtgaggtgagtaagtaagaggttggttgaggggaatatatatagg |
9421807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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