View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5824-Insertion-5 (Length: 845)

Name: NF5824-Insertion-5
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5824-Insertion-5
NF5824-Insertion-5
[»] chr7 (23 HSPs)
chr7 (251-563)||(48187536-48187848)
chr7 (602-772)||(21268178-21268348)
chr7 (602-765)||(16421583-16421744)
chr7 (603-734)||(48187370-48187501)
chr7 (604-767)||(11283359-11283522)
chr7 (602-741)||(36017877-36018017)
chr7 (602-767)||(12528693-12528858)
chr7 (604-772)||(28384009-28384172)
chr7 (649-770)||(28392925-28393046)
chr7 (772-845)||(16421680-16421752)
chr7 (604-673)||(16483973-16484042)
chr7 (772-845)||(21268176-21268249)
chr7 (772-845)||(28384102-28384174)
chr7 (772-841)||(28392977-28393046)
chr7 (797-845)||(48186619-48186667)
chr7 (729-772)||(48186621-48186664)
chr7 (772-838)||(11283359-11283424)
chr7 (772-805)||(48187370-48187403)
chr7 (737-772)||(28393053-28393088)
chr7 (772-811)||(36017977-36018016)
chr7 (770-831)||(16484009-16484069)
chr7 (808-845)||(28393053-28393090)
chr7 (31-64)||(48187833-48187866)
[»] chr3 (8 HSPs)
chr3 (603-772)||(19932666-19932835)
chr3 (602-772)||(1311405-1311575)
chr3 (604-767)||(3224669-3224833)
chr3 (604-739)||(11034921-11035057)
chr3 (772-845)||(1311504-1311577)
chr3 (772-845)||(19932764-19932837)
chr3 (779-838)||(3224774-3224833)
chr3 (772-810)||(11034921-11034959)
[»] chr4 (7 HSPs)
chr4 (604-772)||(15418853-15419021)
chr4 (604-772)||(15425870-15426038)
chr4 (603-741)||(28654433-28654572)
chr4 (779-845)||(15418957-15419023)
chr4 (772-845)||(15425967-15426040)
chr4 (772-811)||(28654434-28654473)
chr4 (604-641)||(52944725-52944762)
[»] chr8 (7 HSPs)
chr8 (603-772)||(44668815-44668983)
chr8 (602-767)||(5537063-5537228)
chr8 (772-845)||(44668912-44668985)
chr8 (603-767)||(3897271-3897438)
chr8 (603-756)||(6818492-6818647)
chr8 (772-838)||(3897271-3897337)
chr8 (772-838)||(5537063-5537128)
[»] chr1 (5 HSPs)
chr1 (602-772)||(18901896-18902066)
chr1 (604-767)||(18153328-18153491)
chr1 (602-703)||(51783494-51783595)
chr1 (771-845)||(18901994-18902068)
chr1 (772-838)||(18153426-18153491)
[»] chr6 (5 HSPs)
chr6 (604-772)||(24540576-24540744)
chr6 (602-765)||(3509768-3509929)
chr6 (779-845)||(24540680-24540746)
chr6 (635-749)||(15277846-15277960)
chr6 (772-845)||(3509865-3509937)
[»] scaffold0003 (2 HSPs)
scaffold0003 (602-765)||(10295-10456)
scaffold0003 (772-845)||(10392-10464)
[»] scaffold0655 (2 HSPs)
scaffold0655 (604-767)||(7491-7650)
scaffold0655 (772-838)||(7584-7650)
[»] scaffold0172 (2 HSPs)
scaffold0172 (603-767)||(34620-34785)
scaffold0172 (772-838)||(34620-34686)
[»] chr5 (1 HSPs)
chr5 (603-681)||(32870275-32870353)
[»] chr2 (4 HSPs)
chr2 (603-767)||(2038937-2039102)
chr2 (772-838)||(29963026-29963092)
chr2 (649-767)||(29963026-29963145)
chr2 (603-640)||(29963192-29963229)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 251 - 563
Target Start/End: Complemental strand, 48187848 - 48187536
Alignment:
Q  251 aaacttgtttgaaattattttaattaaataaattgcatatatagtctttatttttactcatcaaagtgtatttaaaatgttacccatataggtactctag 350  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48187848 aaacttgtttgaagttattttaattaaataaattgcatttatagtctttatttttactcatcaaagtgtatttaaaatgttacccatataggtactctag 48187749  T
Q  351 ttaaagaaattgagtagtcaatagcataataattatagttatatttaatactcgtgtttactatattatattttgataacaaagtaattaaccaggcagg 450  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  48187748 ttaaagatattgagtagtcaataacatagtaattatagttatatttaatactcgtgtttactatattatattttgacaacaaagtaattaaccaggcaag 48187649  T
Q  451 agttagttaccttaaaccaaaccaaagcccttagtacggatcaggagtacctcaagtatgaaactaagttattaagtatttaactgtgaatgtataaaga 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||     
T  48187648 agttagttaccttaaaccaaaccaaagcccttagtacggatcaggagtacctcaagtatgaaactaagttattaagtatttaattgtgaaggtatagagg 48187549  T
Q  551 tagtggaacaaag 563  Q
    |||| ||||||||    
T  48187548 tagtagaacaaag 48187536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 602 - 772
Target Start/End: Complemental strand, 21268348 - 21268178
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 701  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  21268348 caaaggtaagggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttgaaatgagtgct 21268249  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    ||||||||||||||||||||| |||| ||||||||||| || |||||| |||||||||||||| |||||||    
T  21268248 atgtgctatatattggtgatgtgataattatcttggtgatgttgtttttgcatgaatattatgggtattat 21268178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 602 - 765
Target Start/End: Original strand, 16421583 - 16421744
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 701  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  16421583 caaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 16421680  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgt 765  Q
    ||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  16421681 atgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt 16421744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 603 - 734
Target Start/End: Complemental strand, 48187501 - 48187370
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta 702  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48187501 aaaggtaagggcatcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta 48187402  T
Q  703 tgtgctatatattggtgatgcgatagttatct 734  Q
    |||||||||||||||||||| |||| ||||||    
T  48187401 tgtgctatatattggtgatgtgataattatct 48187370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 604 - 767
Target Start/End: Complemental strand, 11283522 - 11283359
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-cta 702  Q
    ||||||||||||||||||||||||||||||||||||||  ||||  |||| |||||||||||| ||||||||| || |||||||| ||| ||||||  ||    
T  11283522 aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattatcataatgatgttgtttagaaatgaatgatta 11283423  T
Q  703 tgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    |||| |||||||||||| || |||| |||||||||||||  || ||||| |||||||||||||||    
T  11283422 tgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgt 11283359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 602 - 741
Target Start/End: Original strand, 36017877 - 36018017
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-c 700  Q
    |||||||||||||||||||||||| |||||||||||||||  |||| ||||| |||||||||||| ||||||||| || |||||||||||| ||||||      
T  36017877 caaaggtaagggcatcactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattatcatattggtgttgttttgaaatgaatgat 36017976  T
Q  701 tatgtgctatatattggtgatgcgatagttatcttggtggt 741  Q
    |||||| |||||||||||| || |||| |||||||||||||    
T  36017977 tatgtgttatatattggtgttgtgataattatcttggtggt 36018017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 602 - 767
Target Start/End: Complemental strand, 12528858 - 12528693
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-c 700  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||| |||| ||| ||||| || |||||||||||| ||||||      
T  12528858 caaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttgttttgaaatgaatgat 12528759  T
Q  701 tatgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    |||||| |||||| || || || |||| |||||||||||||  || ||| | |||||||||||||||    
T  12528758 tatgtgttatataatgatgttgtgataattatcttggtggt-ttgcttttgtatgaatattatgtgt 12528693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 604 - 772
Target Start/End: Original strand, 28384009 - 28384172
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat 703  Q
    |||||||| | ||||||||||||  ||| ||||||||| ||    |||||| |||||| |||| ||||||||| ||||||||||||||| |||||| |||    
T  28384009 aaggtaagagtatcactccacgcatttcggtacgtgtatgt----atatatctgtgttttgataattatcataatgttgttgttttgaaatgaatgttat 28384104  T
Q  704 gtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    ||| |||||||| ||| || | || ||| |||||||||| |||||||||||||| ||||||||||||||    
T  28384105 gtgttatatattcgtggtgtggtaatta-cttggtggtgttgttttggcatgaacattatgtgtattat 28384172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 649 - 770
Target Start/End: Original strand, 28392925 - 28393046
Alignment:
Q  649 atatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgcgatagttatcttggtggtggtgttt 748  Q
    |||||||||| || |||| ||||| ||| ||||||||||||||| |||||| |||||| |||||||||||| || | || || |||||||| || |||||    
T  28392925 atatatttgttttttgataattattataatgttgttgttttgaaatgaatgttatgtgttatatattggtggtgtggtaattctcttggtgttgttgttt 28393024  T
Q  749 tggcatgaatattatgtgtatt 770  Q
    ||| ||||||||||||||||||    
T  28393025 tggtatgaatattatgtgtatt 28393046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 772 - 845
Target Start/End: Original strand, 16421680 - 16421752
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||    
T  16421680 tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt-tattattt 16421752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 604 - 673
Target Start/End: Original strand, 16483973 - 16484042
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatc 673  Q
    ||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||    
T  16483973 aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatatatttgtgttgtgataattatc 16484042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 772 - 845
Target Start/End: Complemental strand, 21268249 - 21268176
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||| |||||||||    
T  21268249 tatgtgctatatattggtgatgtgataattatcttggtgatgttgtttttgcatgaatattatgggtattattt 21268176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 772 - 845
Target Start/End: Original strand, 28384102 - 28384174
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||||| |||||||| ||| |||| |||||| |||||||| | |||||||||||||| ||||||||||||||||    
T  28384102 tatgtgttatatattcgtggtgtggtaatta-cttggtggtgttgttttggcatgaacattatgtgtattattt 28384174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 772 - 841
Target Start/End: Original strand, 28392977 - 28393046
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtatt 841  Q
    |||||| |||||||||||| |||| ||||| ||||||||  | |||||||| ||||||||||||||||||    
T  28392977 tatgtgttatatattggtggtgtggtaattctcttggtgttgttgttttggtatgaatattatgtgtatt 28393046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 797 - 845
Target Start/End: Complemental strand, 48186667 - 48186619
Alignment:
Q  797 taattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||||    
T  48186667 taattatcttggtgttgttgttttggcatgaatattatgtgtattattt 48186619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 729 - 772
Target Start/End: Complemental strand, 48186664 - 48186621
Alignment:
Q  729 ttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  48186664 ttatcttggtgttgttgttttggcatgaatattatgtgtattat 48186621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 838
Target Start/End: Complemental strand, 11283424 - 11283359
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgt 838  Q
    |||||| |||||||||||| ||||||||||||||||||||   || ||||| |||||||||||||||    
T  11283424 tatgtgttatatattggtgttgtgataattatcttggtgg-tttgctttggtatgaatattatgtgt 11283359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 805
Target Start/End: Complemental strand, 48187403 - 48187370
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatct 805  Q
    ||||||||||||||||||||||||||||||||||    
T  48187403 tatgtgctatatattggtgatgtgataattatct 48187370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 772
Target Start/End: Original strand, 28393053 - 28393088
Alignment:
Q  737 gtggtggtgttttggcatgaatattatgtgtattat 772  Q
    ||||||||||||||||||||| ||||||||||||||    
T  28393053 gtggtggtgttttggcatgaacattatgtgtattat 28393088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 811
Target Start/End: Original strand, 36017977 - 36018016
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtgg 811  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  36017977 tatgtgttatatattggtgttgtgataattatcttggtgg 36018016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 831
Target Start/End: Original strand, 16484009 - 16484069
Alignment:
Q  770 tatatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatat 831  Q
    |||||||| |||||||| ||| ||||||||||||||||||||   ||||| |||||||||||    
T  16484009 tatatgtg-tatatatttgtgttgtgataattatcttggtggttttgtttcggcatgaatat 16484069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 808 - 845
Target Start/End: Original strand, 28393053 - 28393090
Alignment:
Q  808 gtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  28393053 gtggtggtgttttggcatgaacattatgtgtattattt 28393090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 48187866 - 48187833
Alignment:
Q  31 tgatgggtttacgtaaagaaacttgtttgaagtt 64  Q
    |||||||||| |||||||||||||||||||||||    
T  48187866 tgatgggtttgcgtaaagaaacttgtttgaagtt 48187833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 4e-74; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 603 - 772
Target Start/End: Original strand, 19932666 - 19932835
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta 702  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  19932666 aaaggtaagggcatcactccacgcgcttccgtacgtgtatttatgaatatatttgtgtcgtgatgattattatagtgttgttgttttgaagtgaatgcta 19932765  T
Q  703 tgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19932766 tgtgctatatattgctgatgtgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 19932835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 602 - 772
Target Start/End: Original strand, 1311405 - 1311575
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 701  Q
    |||| ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  1311405 caaatgtaagagtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatact 1311504  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    ||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||    
T  1311505 atgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattat 1311575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 604 - 767
Target Start/End: Original strand, 3224669 - 3224833
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat 703  Q
    |||||||||||||||||||||||| |||||||| ||||  ||   |||||||||||||||||| |||| |||| || |||||||| ||| |||||| |||    
T  3224669 aaggtaagggcatcactccacgcgtttccgtacatgtatatgattatatatttgtgttgtgataattagcatattgctgttgttt-gaaatgaatgttat 3224767  T
Q  704 gtgctata--tattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    ||||||||  |||||||| || |||| ||||||||||| || ||||||| ||||||||||||||||    
T  3224768 gtgctatatatattggtgttgtgataattatcttggtgttgttgttttgacatgaatattatgtgt 3224833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 604 - 739
Target Start/End: Complemental strand, 11035057 - 11034921
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-cta 702  Q
    ||||||||||||||||| |||||| |||||||| ||||  |||| ||||| |||||||||||| ||||||||| || |||||||||||| ||||||  ||    
T  11035057 aaggtaagggcatcacttcacgcgtttccgtacatgtatatgtgtatataattgtgttgtgataattatcataatgatgttgttttgaaatgaatgatta 11034958  T
Q  703 tgtgctatatattggtgatgcgatagttatcttggtg 739  Q
    |||| |||||||||||| || |||| |||||||||||    
T  11034957 tgtgttatatattggtgttgtgataattatcttggtg 11034921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 772 - 845
Target Start/End: Original strand, 1311504 - 1311577
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  1311504 tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt 1311577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 772 - 845
Target Start/End: Original strand, 19932764 - 19932837
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  19932764 tatgtgctatatattgctgatgtgatagttatcttggtggtggtgttttggcatgaatattatgtgtattattt 19932837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 779 - 838
Target Start/End: Original strand, 3224774 - 3224833
Alignment:
Q  779 tatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgt 838  Q
    |||||||||||| |||||||||||||||||||  | ||||||| ||||||||||||||||    
T  3224774 tatatattggtgttgtgataattatcttggtgttgttgttttgacatgaatattatgtgt 3224833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 772 - 810
Target Start/End: Complemental strand, 11034959 - 11034921
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtg 810  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  11034959 tatgtgttatatattggtgttgtgataattatcttggtg 11034921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 4e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 604 - 772
Target Start/End: Original strand, 15418853 - 15419021
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat 703  Q
    ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15418853 aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat 15418952  T
Q  704 gtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    ||  ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||    
T  15418953 gttttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattat 15419021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 604 - 772
Target Start/End: Original strand, 15425870 - 15426038
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat 703  Q
    ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15425870 aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtattgttgttttgaagtgaatgctat 15425969  T
Q  704 gtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    || |||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||| ||||||||    
T  15425970 gttctatatattggtgatgtgataattagcttggtggtgttgttttggcatgaatattatatgtattat 15426038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 603 - 741
Target Start/End: Complemental strand, 28654572 - 28654433
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-ct 701  Q
    ||||||||||||||||||||||||| |||||||||||||  |||| ||||| || ||||||||| ||||||||| ||  ||||||||||| ||||||  |    
T  28654572 aaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattatcataatggggttgttttgaaatgaatgatt 28654473  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggt 741  Q
    ||||| |||||||||||| || |||| |||||||||||||    
T  28654472 atgtgttatatattggtgttgtgataattatcttggtggt 28654433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 779 - 845
Target Start/End: Original strand, 15418957 - 15419023
Alignment:
Q  779 tatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  15418957 tatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt 15419023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 772 - 845
Target Start/End: Original strand, 15425967 - 15426040
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    ||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||    
T  15425967 tatgttctatatattggtgatgtgataattagcttggtggtgttgttttggcatgaatattatatgtattattt 15426040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 811
Target Start/End: Complemental strand, 28654473 - 28654434
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtgg 811  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  28654473 tatgtgttatatattggtgttgtgataattatcttggtgg 28654434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 641
Target Start/End: Original strand, 52944725 - 52944762
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgta 641  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  52944725 aaggtaagggcatcactccacacgcttccgtacatgta 52944762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 3e-69; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 603 - 772
Target Start/End: Original strand, 44668815 - 44668983
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta 702  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  44668815 aaaggtaagggcatcactctacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttg-tttgaagtgaatgtta 44668913  T
Q  703 tgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    |||||||||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||    
T  44668914 tgtgctatatattggtgatgtgataattatcttggtgttgttgttttggcatgaatattatgtgtattat 44668983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 602 - 767
Target Start/End: Complemental strand, 5537228 - 5537063
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-c 700  Q
    |||||||||  |||||||||||||||||||||||||||||  |||| ||||| |||||| ||||| ||||||||| || |||||||||||| ||||||      
T  5537228 caaaggtaacagcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtagtgataattatcataatggtgttgttttgaaatgaatgat 5537129  T
Q  701 tatgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    |||||| |||||| ||||| || |||| |||||||||||||  || ||||| |||||||||||||||    
T  5537128 tatgtgttatatagtggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgt 5537063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 772 - 845
Target Start/End: Original strand, 44668912 - 44668985
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  44668912 tatgtgctatatattggtgatgtgataattatcttggtgttgttgttttggcatgaatattatgtgtattattt 44668985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 603 - 767
Target Start/End: Complemental strand, 3897438 - 3897271
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg- 699  Q
    ||||||||||| ||||||||||| | |||||||||||||  |||  ||||||  |||||||||||| |||||  | ||| |||||||||||| ||||||     
T  3897438 aaaggtaagggtatcactccacgtgtttccgtacgtgtatatgtatatatataattgtgttgtgataattattttggtggtgttgttttgaaatgaatga 3897339  T
Q  700 ctatgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    ||||||| || ||||| ||| || |||| |||| ||||||||| ||||||||||||||||| ||||||    
T  3897338 ctatgtgttacatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt 3897271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 603 - 756
Target Start/End: Original strand, 6818492 - 6818647
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttg-ttttgaagtgaatgct 701  Q
    ||||||||||||||||||||||||||||  |||||||||  | || |||||||||| ||||||| |||||||||||| ||||| ||||||| |||||| |    
T  6818492 aaaggtaagggcatcactccacgcgcttatgtacgtgtatatttgtatatatttgtattgtgataattatcatagtggtgttgtttttgaaatgaatgtt 6818591  T
Q  702 atgtgctatatattggtgatgcgatagttat-cttggtggtggtgttttggcatga 756  Q
    || || ||||| ||| || || |||| ||||  ||||||||  ||| |||||||||    
T  6818592 atctgttatatgttgttgttgtgataattatatttggtggttttgtcttggcatga 6818647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 838
Target Start/End: Complemental strand, 3897337 - 3897271
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgt 838  Q
    |||||| || ||||| ||| |||||||||||| ||||||| | ||||||||||||||||| ||||||    
T  3897337 tatgtgttacatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt 3897271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 772 - 838
Target Start/End: Complemental strand, 5537128 - 5537063
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgt 838  Q
    |||||| |||||| ||||| ||||||||||||||||||||   || ||||| |||||||||||||||    
T  5537128 tatgtgttatatagtggtgttgtgataattatcttggtgg-tttgctttggtatgaatattatgtgt 5537063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 2e-67; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 602 - 772
Target Start/End: Original strand, 18901896 - 18902066
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 701  Q
    |||||||||||| |||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  18901896 caaaggtaagggtatcattccacgcgcttccgtacgtgtatttgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatgat 18901995  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||    
T  18901996 atgtgctatatattggtgatgtgatagttatcttggtgttgttgtttttgcatgaatattatgtgtattat 18902066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 604 - 767
Target Start/End: Original strand, 18153328 - 18153491
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-cta 702  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||| |||||| ||||| ||||||||| || |||||||||||| ||||||  ||    
T  18153328 aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttgttttgaaatgaatgatta 18153427  T
Q  703 tgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    |||| |||||||||||| || |||| |||||||||||||  || ||||| |||||||||||||||    
T  18153428 tgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgt 18153491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 602 - 703
Target Start/End: Complemental strand, 51783595 - 51783494
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 701  Q
    ||||||||| |||||||||||||| ||||| |||||| || |||||||||||||| |||| | |||||||| ||||||||||||||||||||| ||||||    
T  51783595 caaaggtaaaggcatcactccacgtgcttctgtacgtatatgtgtgaatatatttatgttataatgattattatagtgttgttgttttgaagtaaatgct 51783496  T
Q  702 at 703  Q
    ||    
T  51783495 at 51783494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 771 - 845
Target Start/End: Original strand, 18901994 - 18902068
Alignment:
Q  771 atatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||||||||||||||||||||||||||| |||||||||||  | |||||| ||||||||||||||||||||||||    
T  18901994 atatgtgctatatattggtgatgtgatagttatcttggtgttgttgtttttgcatgaatattatgtgtattattt 18902068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 838
Target Start/End: Original strand, 18153426 - 18153491
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgt 838  Q
    |||||| |||||||||||| ||||||||||||||||||||   || ||||| |||||||||||||||    
T  18153426 tatgtgttatatattggtgttgtgataattatcttggtgg-tttgctttggtatgaatattatgtgt 18153491  T

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Target: chr6 (Bit Score: 129; Significance: 3e-66; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 604 - 772
Target Start/End: Original strand, 24540576 - 24540744
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat 703  Q
    |||||||||| |||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24540576 aaggtaagggtatcactccacacgcttccgtacgtttatgtgtgaatatatttgtgttgtgatgattatcatattgttgttgttttgaagtgaatgctat 24540675  T
Q  704 gtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgtattat 772  Q
    ||  ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||    
T  24540676 gttttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattat 24540744  T

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Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 602 - 765
Target Start/End: Original strand, 3509768 - 3509929
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 701  Q
    ||||||||||||||||| |||| ||||||||||| ||||| ||||||||||  ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  3509768 caaaggtaagggcatcattccatgcgcttccgtatgtgtatgtgtgaatat--ttgtgttgtgatggttaccatagtgttgttgttttgaagtgaatgct 3509865  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgt 765  Q
    ||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||||||||||    
T  3509866 atgtgctatatattggtgatgtgataattaccttggtgttgttgttttggcatgaatattatgt 3509929  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 779 - 845
Target Start/End: Original strand, 24540680 - 24540746
Alignment:
Q  779 tatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  24540680 tatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt 24540746  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 635 - 749
Target Start/End: Original strand, 15277846 - 15277960
Alignment:
Q  635 acgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgcgatagttatct 734  Q
    ||||||| ||||| ||||||||||||| |||| |||| |||| | ||||||||| ||| ||||||||||||| |||||||||||| |  |||| ||||||    
T  15277846 acgtgtatgtgtgtatatatttgtgttttgataattaacataatattgttgtttggaaatgaatgctatgtgttatatattggtggtatgataattatct 15277945  T
Q  735 tggtggtggtgtttt 749  Q
    |||||||| ||||||    
T  15277946 tggtggtgttgtttt 15277960  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 772 - 845
Target Start/End: Original strand, 3509865 - 3509937
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    ||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||||||||| ||||||||    
T  3509865 tatgtgctatatattggtgatgtgataattaccttggtgttgttgttttggcatgaatattatgt-tattattt 3509937  T

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Target: scaffold0003 (Bit Score: 121; Significance: 2e-61; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 602 - 765
Target Start/End: Original strand, 10295 - 10456
Alignment:
Q  602 caaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 701  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10295 caaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 10392  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgt 765  Q
    ||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  10393 atgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt 10456  T

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Target: scaffold0003; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 772 - 845
Target Start/End: Original strand, 10392 - 10464
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgtattattt 845  Q
    |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||    
T  10392 tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt-tattattt 10464  T

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Target: scaffold0655 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 604 - 767
Target Start/End: Original strand, 7491 - 7650
Alignment:
Q  604 aaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatat--atttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 701  Q
    ||||||||||||||||||||||||||||||||| |||| || |  ||||  |||||||||||||| |||||||| ||||||||   ||||| ||   | |    
T  7491 aaggtaagggcatcactccacgcgcttccgtacatgtatgtttatatatctatttgtgttgtgataattatcatggtgttgtt---ttgaaatg---gtt 7584  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    ||||| ||| |||||||| ||  ||| |||||||||||||  ||||||| ||||||||||||||||    
T  7585 atgtgttatgtattggtgttgtaataattatcttggtggttttgttttgccatgaatattatgtgt 7650  T

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Target: scaffold0655; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 838
Target Start/End: Original strand, 7584 - 7650
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgt 838  Q
    |||||| ||| |||||||| ||| ||||||||||||||||   ||||||| ||||||||||||||||    
T  7584 tatgtgttatgtattggtgttgtaataattatcttggtggttttgttttgccatgaatattatgtgt 7650  T

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Target: scaffold0172 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 603 - 767
Target Start/End: Complemental strand, 34785 - 34620
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-ct 701  Q
    ||||||||||||||||||||||||| |||||||||||||  |||  |||||  ||||||||||| |||||  | ||| || | ||||||| |||| |  |    
T  34785 aaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtatatataactgtgttgtgataattattttggtggtgctattttgaaatgaaggatt 34686  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    ||||| | |||||| ||| || |||| |||| ||||||||| ||||||||||||||||| ||||||    
T  34685 atgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt 34620  T

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Target: scaffold0172; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 838
Target Start/End: Complemental strand, 34686 - 34620
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgt 838  Q
    |||||| | |||||| ||| |||||||||||| ||||||| | ||||||||||||||||| ||||||    
T  34686 tatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt 34620  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 603 - 681
Target Start/End: Complemental strand, 32870353 - 32870275
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgtt 681  Q
    |||||||||||  || ||||||| |||||||||||| ||  |||| |||||||| ||||||||||||||||||||||||    
T  32870353 aaaggtaagggtttcgctccacgtgcttccgtacgtatatatgtgtatatatttatgttgtgatgattatcatagtgtt 32870275  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 603 - 767
Target Start/End: Original strand, 2038937 - 2039102
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgtacgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-ct 701  Q
    |||||||||| |||||||||||| |||||||||| ||||  |||  |||||  ||||||||||| |||||  | ||| ||  |||||||| |||| |  |    
T  2038937 aaaggtaaggacatcactccacgtgcttccgtacatgtatatgtatatataactgtgttgtgataattattttggtggtgccgttttgaaatgaaggatt 2039036  T
Q  702 atgtgctatatattggtgatgcgatagttatcttggtggtggtgttttggcatgaatattatgtgt 767  Q
    ||||| | |||||| ||| |  |||| |||| ||||||||| ||||||| ||||||||| ||||||    
T  2039037 atgtgttttatatttgtgttatgataattattttggtggtgttgttttgacatgaatatcatgtgt 2039102  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 838
Target Start/End: Complemental strand, 29963092 - 29963026
Alignment:
Q  772 tatgtgctatatattggtgatgtgataattatcttggtggcggtgttttggcatgaatattatgtgt 838  Q
    |||||| | |||||| ||| |||||||||||| ||||||| | ||||||||||||||||| ||||||    
T  29963092 tatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt 29963026  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 767
Target Start/End: Complemental strand, 29963145 - 29963026
Alignment:
Q  649 atatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct-atgtgctatatattggtgatgcgatagttatcttggtggtggtgtt 747  Q
    ||||| |||||||||||| |||||  | ||| ||  |||||||| |||| | | ||||| | |||||| ||| || |||| |||| ||||||||| ||||    
T  29963145 atataattgtgttgtgataattattttggtggtgcagttttgaaatgaaggattatgtgttttatatttgtgttgtgataattattttggtggtgttgtt 29963046  T
Q  748 ttggcatgaatattatgtgt 767  Q
    ||||||||||||| ||||||    
T  29963045 ttggcatgaatatcatgtgt 29963026  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 640
Target Start/End: Complemental strand, 29963229 - 29963192
Alignment:
Q  603 aaaggtaagggcatcactccacgcgcttccgtacgtgt 640  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  29963229 aaaggtaaggatatcactccacgcgcttccgtacgtgt 29963192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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