View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824-Insertion-8 (Length: 814)
Name: NF5824-Insertion-8
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 408 - 808
Target Start/End: Complemental strand, 48311551 - 48311136
Alignment:
| Q |
408 |
aaatctcacttcatgtaccacgcgttcttcatattatgctttattatttccccttcataaaaataaaaccattcgataattccaaagaagtgtaacttga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48311551 |
aaatctcacttcatgtaccacgcgttcttcatattatgctttattatttccccttcataaaaataaaaccattcgataattccaaagaagtgtaacttga |
48311452 |
T |
|
| Q |
508 |
gtatacacgatgaagcaa--gtgaccaccttggacgttgcctcaatccgctctccaaaatagaaaatgtaaccaaacacacaaatattgacggacataac |
605 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48311451 |
gtatacacgatgaagcaacagtgaccaccttggacgttgcctcaatccgctctccaaaatagaaaatgtaaccaaacacacaaatattgacggacataac |
48311352 |
T |
|
| Q |
606 |
tagaacactataacacaaaatgaaaacaaagtttacttttgggaccatccataattccatgtgcgtacatcaagaaaaacgacataccaaattca-tttt |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48311351 |
tagaacactataacacaaaatgaaaacaaagattacttttgggatcatccataattccatgtgcgtacatcaagaaaaacgacataccaaattcattttt |
48311252 |
T |
|
| Q |
705 |
agttaaccaagcagaaaatgtcnnnnnnnnnnnnngatttattattttgggcaag------------agaaagggttttgaattataggtaacccaagac |
792 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
48311251 |
agttaaccaagcagaaaatgtcaaaaataaaaaaagatttattattttgggcaagagaaaggtaagaagaaagggttttgaattataggtaacctaagac |
48311152 |
T |
|
| Q |
793 |
taagagtgtcttgtta |
808 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
48311151 |
taagagtgtcttgtta |
48311136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 131 - 404
Target Start/End: Complemental strand, 48313555 - 48313283
Alignment:
| Q |
131 |
ctaaacaacatattgttagatactagctagtttgtaatttaaaacaaaagttcaagcttatnnnnnnnnnncactgttagaatatactagttttacacta |
230 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
48313555 |
ctaaagaacatattgttagatactagctagtttgtaatttaaaacaaaagttcaggcttataaaaaaaaa-caccgttagaatatactagttttacacta |
48313457 |
T |
|
| Q |
231 |
tatttgacaattatatttgatagaaaatctgtaaacggtgattaacatagtaaacatgaagggaggtgagtgnnnnnnncaaactaaaaaggatatgaat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48313456 |
tatttgacaattatatttgatagaaaatctgtaaacggtgattaacatagtaaacatgaagggaggtgagtgtttttttcaaactaaaaaggatatgaat |
48313357 |
T |
|
| Q |
331 |
gtcttttaataaaatcttagagacccttcaaataactaaattaataaatttgtacataatagaaaaactcaatt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48313356 |
gtcttttaataaaatcttagagacccttcaaataactaaattaataaatttgtacataatagaaaaactcaatt |
48313283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 48313868 - 48313739
Alignment:
| Q |
9 |
aagacatagcccagtaacattcctttttccatgttatatctctgtttacaaactttgcactattctcacccactatggttgcatgatggattgagtatcc |
108 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48313868 |
aagacatagcctagtaccattcctttttccatgttatatctctgtttacaaactttgcactattctcacccactatggttgcatgatggattgagtatcc |
48313769 |
T |
|
| Q |
109 |
tagttggaatgctagctaatttctaaacaa |
138 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
48313768 |
tagttggaatgctagctaatttttaaacaa |
48313739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University