View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824-Insertion-9 (Length: 782)
Name: NF5824-Insertion-9
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 755
Target Start/End: Complemental strand, 12812491 - 12811757
Alignment:
| Q |
8 |
aagaacttgtgccacaagctcagaaatgtgtagacaaaggtgattataatggtgtcaagcaaagtgcaaccactgctggaaat--ttggctgattcttgt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12812491 |
aagaacttgtgccacaagctcagaaatgtgtagacaaaagtgattataatggtgtcaagcaaagtgcaaccactgctggaaataattggctgattcttgt |
12812392 |
T |
|
| Q |
106 |
gagaagaaatgcaatggcaccactagttcagctatttcgccacttggagatagtaatcaatatgtgaaaaatatgcgtgcaattacagtctccattgtta |
205 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12812391 |
gagaagaaatgcaatggc--------------tatttcgccacttggagatagtaatcaatatgtgaaaaatatgtgtgcaattacagtctccattgtta |
12812306 |
T |
|
| Q |
206 |
ccaaattgcctaaatcaattcaccaaactttgacataggttgtttagtaataattgtgggtttgtcttatttggtgtatatattgtattgatatctatgt |
305 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12812305 |
ccaaattgcctaaatcaattcaccaaactttgacagaggttgtttagtaataattttgggtttgtcttatttgatgtatatattgtattgatatctatgt |
12812206 |
T |
|
| Q |
306 |
cttgtttggctctcatgatttttcttttattgatcattgtccataatttgcacattataaacaaatggcaagtgaaaagctgtgagcttgttgtattcaa |
405 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12812205 |
cttgtttggctttcatgatttttcttttattgatcattgtccataatttgcaaattataaacaaatggcaagtgaaaagctgtgagcttgttgtattcaa |
12812106 |
T |
|
| Q |
406 |
tagtcttttagctaggcaattgtaaatgcaatttataaagttagttattatcatatta--ttatttgaagtggtagctacatcttgtaaaaaagtgtgct |
503 |
Q |
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| T |
12812105 |
tagtcttttagctaggcaattgtaaatgcaatttataaagttagttattatcatattattttatttgaagtggtagctacatcttgtaaaaaagtgtgct |
12812006 |
T |
|
| Q |
504 |
aactaggcttcttttccccatctaattgttggatttccactgtctctctcttgaaatttttgttcattcatcctcatcacttgagagagtttgtttggga |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12812005 |
tactaggcttcttttccccatctaattgttggatttccactgtctctctcttgaaatttttgttcattcatcctcatcacttgagagagtttgtttgggg |
12811906 |
T |
|
| Q |
604 |
ccattttttctttgaatcacccatatgtatatcttttatctaaataagtagtttccatgtagatttcctctttcatttgtattctctgtaattttgttgt |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12811905 |
ccattttttctttgaatcacccatatgtatatcttttatctaaataagtagtttccatgtagatttcctctttcatttgtattctctg---ttttgttgt |
12811809 |
T |
|
| Q |
704 |
ttaagtgttgagttgtttcgttcatcgttttagtgtgacattgtttaatttt |
755 |
Q |
| |
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| T |
12811808 |
ctaagtgttgagttgtttcgtttatcattttagtacgacattgtttaatttt |
12811757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 12838388 - 12838120
Alignment:
| Q |
8 |
aagaacttgtgccacaagctcagaaatgtgtagacaaaggtgattataatggtgtcaagcaaagtgcaaccactgctggaaatttggctgattcttgtga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
12838388 |
aagaacttgtgccacaagctcagaaatgtgtagacaaaagtgattataatggtgtcaaacaaagtgcaaccactgctggaaatttggctgatacttgtgg |
12838289 |
T |
|
| Q |
108 |
gaagaaatgcaatggcaccactagttcagc---tatttcgccacttggagatagtaatcaatatgtgaaaaatatgcgtgcaattacagtctccattgtt |
204 |
Q |
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|||||||||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
12838288 |
gaagaaatgcaatggcaccactagttcagctgttctttcgcaacttggggatagtaatcaatatgtgaaaaatatgtgtgcaattacagtctccattgct |
12838189 |
T |
|
| Q |
205 |
accaaattgcctaaatcaattcaccaaactttgacataggttgtttagtaataattgtgggtttgtctt |
273 |
Q |
| |
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||| |||| ||| |||||| |||||||| ||| |||| || ||||||| ||||||||| ||||||| |
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| T |
12838188 |
acccaatttcctcaatcaactcaccaaattttaccataaattttttagtactaattgtggtattgtctt |
12838120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 12831561 - 12831364
Alignment:
| Q |
8 |
aagaacttgtgccacaagctcagaaatgtgtagacaaaggtgattataatggtgtcaagcaaagtgcaaccactgctggaaatttggctgattcttgtga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
12831561 |
aagaacttgtgccacaagctcagaaatgtgtagacaaaagtgattataatggtgtcaaacaaagtgcaaccactgctggaaatttggctgatacttgtgg |
12831462 |
T |
|
| Q |
108 |
gaagaaatgcaatggcaccactagttcagc---tatttcgccacttggagatagtaatcaatatgtgaaaaatatgcgtgcaattacagtctccattg |
202 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12831461 |
gaagaaatgcaatggcaccactagttcagctgttctttcgcaacttggggatagtaatcaatatgtgaaaaatatgtgtgcaattacagtctccattg |
12831364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 341 - 483
Target Start/End: Complemental strand, 12830992 - 12830851
Alignment:
| Q |
341 |
attgtccataatttgcacattataaacaaatggcaagtgaaaagctgtgagcttgttgtattcaatagtcttt-tagctaggcaattgtaaatgcaattt |
439 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||| |||||| ||| |||||| ||||||||||||||||| | |
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| T |
12830992 |
attgtccataatttgtacattataaacaaatgggcagtaaaaagctacgagcttgttgtat--aatagtttttgtagctaagcaattgtaaatgcaatat |
12830895 |
T |
|
| Q |
440 |
ataaagttagttattatcatattattatttgaagtggtagctac |
483 |
Q |
| |
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||| ||| |||||||||||| || || |||||| | |||||| |
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| T |
12830894 |
atagagtgtattattatcatataatgatgtgaagtagaagctac |
12830851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 257 - 354
Target Start/End: Complemental strand, 12838036 - 12837936
Alignment:
| Q |
257 |
aattgtgggtttgtcttatttggtgtatatattgtattgatatctatgtcttgtttggctctcatgat---ttttcttttattgatcattgtccataatt |
353 |
Q |
| |
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|||| ||| |||||||||||| |||||||||| |||||||||| |||||||| | ||||| ||||||| ||||||| | ||||||||||||||||||| |
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| T |
12838036 |
aattttggatttgtcttattttgtgtatatatagtattgatatatatgtcttttatggctgtcatgattttttttcttatgttgatcattgtccataatt |
12837937 |
T |
|
| Q |
354 |
t |
354 |
Q |
| |
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| |
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|
| T |
12837936 |
t |
12837936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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