View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5824_high_18 (Length: 425)

Name: NF5824_high_18
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5824_high_18
NF5824_high_18
[»] chr4 (50 HSPs)
chr4 (14-421)||(7765989-7766396)
chr4 (14-328)||(7786811-7787125)
chr4 (148-311)||(7878828-7878991)
chr4 (148-328)||(7771840-7772020)
chr4 (148-328)||(7790525-7790705)
chr4 (148-328)||(7908747-7908927)
chr4 (168-323)||(7779370-7779525)
chr4 (203-316)||(7773234-7773347)
chr4 (148-328)||(7237179-7237359)
chr4 (17-112)||(7771745-7771840)
chr4 (17-112)||(7790430-7790525)
chr4 (158-326)||(7823427-7823598)
chr4 (18-86)||(49043810-49043878)
chr4 (158-326)||(7801095-7801266)
chr4 (28-92)||(48864396-48864460)
chr4 (10-89)||(7773464-7773543)
chr4 (21-92)||(45371710-45371781)
chr4 (19-89)||(48853033-48853103)
chr4 (158-326)||(7813935-7814106)
chr4 (17-93)||(7237378-7237454)
chr4 (17-89)||(7878733-7878805)
chr4 (150-258)||(48903399-48903507)
chr4 (28-88)||(49038518-49038578)
chr4 (21-112)||(7908656-7908747)
chr4 (28-79)||(48147362-48147413)
chr4 (28-92)||(45384528-45384592)
chr4 (19-79)||(49048204-49048264)
chr4 (18-86)||(50666666-50666734)
chr4 (26-89)||(7813836-7813899)
chr4 (17-92)||(45365856-45365931)
chr4 (22-89)||(48870915-48870982)
chr4 (22-89)||(48876219-48876286)
chr4 (22-89)||(48886601-48886668)
chr4 (28-92)||(48156065-48156129)
chr4 (28-76)||(48903316-48903364)
chr4 (148-195)||(7773394-7773441)
chr4 (26-89)||(7800996-7801059)
chr4 (150-273)||(7905010-7905133)
chr4 (333-379)||(7237112-7237158)
chr4 (16-58)||(48899089-48899131)
chr4 (37-86)||(37826632-37826681)
chr4 (19-76)||(48861640-48861697)
chr4 (333-421)||(7787147-7787235)
chr4 (284-328)||(45384320-45384364)
chr4 (29-77)||(50672860-50672908)
chr4 (179-262)||(48147221-48147304)
chr4 (170-249)||(48871027-48871106)
chr4 (170-249)||(48876331-48876410)
chr4 (170-249)||(48886713-48886792)
chr4 (180-258)||(45365726-45365804)
[»] chr8 (4 HSPs)
chr8 (179-241)||(4030311-4030373)
chr8 (28-77)||(4031577-4031626)
chr8 (28-89)||(15349244-15349305)
chr8 (28-67)||(4962180-4962219)
[»] chr3 (5 HSPs)
chr3 (24-85)||(11024146-11024207)
chr3 (19-77)||(11005579-11005637)
chr3 (17-92)||(47451536-47451611)
chr3 (168-252)||(47451412-47451496)
chr3 (28-67)||(11015152-11015191)
[»] chr2 (1 HSPs)
chr2 (179-241)||(29350898-29350960)
[»] chr5 (6 HSPs)
chr5 (16-64)||(9120112-9120160)
chr5 (28-92)||(42561969-42562033)
chr5 (17-64)||(179408-179455)
chr5 (170-258)||(42561842-42561930)
chr5 (17-89)||(29688479-29688551)
chr5 (212-241)||(9120272-9120301)
[»] chr7 (2 HSPs)
chr7 (19-90)||(48884176-48884247)
chr7 (170-258)||(48884291-48884382)
[»] chr6 (3 HSPs)
chr6 (31-93)||(21979263-21979325)
chr6 (28-79)||(21016182-21016233)
chr6 (212-260)||(21979147-21979195)
[»] chr1 (2 HSPs)
chr1 (33-88)||(24367531-24367586)
chr1 (28-88)||(24416139-24416199)


Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 7765989 - 7766396
Alignment:
Q  14 tactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctcaaaatgccattcctgatcat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765989 tactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctcaaaatgccattcctgatcat 7766088  T
Q  114 gaatttgaccctctgtactattccagatttgtggactactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766089 gaatttgaccctctgtactattccagatttgtggactactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaat 7766188  T
Q  214 tggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766189 tggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctc 7766288  T
Q  314 tggtgacaatgagcacaatcaagaacaatgaggttgtgaaatattctacttcattgttttatttatgttgaattatgaactcttgagtcgctgcatttgt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766289 tggtgacaatgagcacaatcaagaacaatgaggttgtgaaatattctacttcattgttttatttatgttgaattatgaactcttgagtcgctgcatttgt 7766388  T
Q  414 aacatgtg 421  Q
    ||||||||    
T  7766389 aacatgtg 7766396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 7786811 - 7787125
Alignment:
Q  14 tactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctcaaaatgccattcctgatcat 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||  || |||| |||||| ||||||||||||||  ||| |||||||| |||     
T  7786811 tactaatgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttcttcctcagtatgtcattcctggtcac 7786910  T
Q  114 gaatttgaccctctgtactattccagatttgtggactactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaat 213  Q
     | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786911 tactttaaccctctgtactattccagatttgcggactactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaat 7787010  T
Q  214 tggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7787011 tggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtatacagagtctctactttcactctc 7787110  T
Q  314 tggtgacaatgagca 328  Q
     |||||| |||||||    
T  7787111 cggtgacgatgagca 7787125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 148 - 311
Target Start/End: Original strand, 7878828 - 7878991
Alignment:
Q  148 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 247  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||| | ||  |||||||| |||||||||||||||||| ||||||||||| ||| |    
T  7878828 actactttcaacctatatattctacagaaaatggtgatattattggaagaaatcatggtactagattggtgaagtataatgataaaggacagttattaag 7878927  T
Q  248 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactc 311  Q
    ||||| ||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||    
T  7878928 gcatcgctccttctgtaatagtccatccgaagttgtcatgtatacggagtctctactttcactc 7878991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 7771840 - 7772020
Alignment:
Q  148 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 247  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||||||| | ||  | |||||| |||||||||||||||||| ||||||||  | |||||    
T  7771840 actactttcaacctatatattctacaaaaaatggtgatattattggaagaaatcttagtactagattggtgaagtataatgataaaggacaactattagg 7771939  T
Q  248 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgagca 328  Q
     || | ||||||||| ||||||| ||| ||| ||||| ||||||| || ||||| ||||||||   |||||||||||||||    
T  7771940 acagcgctccttctgtaacagtcaatctgaaattgtcatgtatacagaatctctgctttcactacttggtgacaatgagca 7772020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 7790525 - 7790705
Alignment:
Q  148 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 247  Q
    |||||||||| ||||| ||||||||| || |||||||||||||||||| | ||  |||||||| |||||||||||||||||| ||||||||  | |||||    
T  7790525 actactttcaacctatatattctacaaaatatggtgatattattggaagaaatcatggtactagattggtgaagtataatgataaaggacaactattagg 7790624  T
Q  248 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgagca 328  Q
     || | ||||||||| ||||||| ||| |||||| || ||||||| || ||||| ||||||||   |||||||||||||||    
T  7790625 acagcgctccttctgtaacagtcaatctgaagttttcatgtatacagaatctctgctttcactacttggtgacaatgagca 7790705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 148 - 328
Target Start/End: Original strand, 7908747 - 7908927
Alignment:
Q  148 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 247  Q
    ||||||||||||||||  | |||||| |||| |||||||||||||||| |  |  |  | | | |||||||||||||||||| ||||||||| | ||| |    
T  7908747 actactttcaccctatacactctacaaaaaacggtgatattattggaagaactcttaattccagattggtgaagtataatgataaaggacagctattaag 7908846  T
Q  248 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgagca 328  Q
    ||||| | ||||||  || |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  7908847 gcatcgcaccttctttaatagtccatccgaagttgtcatgtataccgagtctctgctttcactccctggtgacaatgagca 7908927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 323
Target Start/End: Complemental strand, 7779525 - 7779370
Alignment:
Q  168 tctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaaca 267  Q
    |||||| ||||||||||||||||||||  | ||  |||||||| ||||||||||||||||||  |||||||| | ||| |||||| ||||||||| || |    
T  7779525 tctacaaaaaatggtgatattattggaggaaatcttggtactagattggtgaagtataatgatgaaggacagctattaaggcatcgctccttctgtaata 7779426  T
Q  268 gtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaat 323  Q
    |||||| |||||||||| ||||||| |||||||| ||||| ||| || ||||||||    
T  7779425 gtccattcgaagttgtcatgtatacggagtctctgctttcgctccctagtgacaat 7779370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 7773347 - 7773234
Alignment:
Q  203 tggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctcta 302  Q
    |||||||| |||||||||||||||| || |||||||||| ||| |||||||| ||||||| || |||||||||||||||||| ||||||| ||||||||     
T  7773347 tggtactagattggtgaagtataattaccaaggacagttattaaggcatcacgccttctgtaatagtccatccgaagttgtcatgtatactgagtctctg 7773248  T
Q  303 ctttcactctctgg 316  Q
    ||||||||| ||||    
T  7773247 ctttcactccctgg 7773234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 7237359 - 7237179
Alignment:
Q  148 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 247  Q
    ||||||||||||||||  | |||||| ||||||||||||||||||||| |  |  || ||||| |||||||||||||||||| ||||||||  | ||||     
T  7237359 actactttcaccctatacactctacaaaaaatggtgatattattggaagaagtcatgatactagattggtgaagtataatgataaaggacaactattagc 7237260  T
Q  248 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgagca 328  Q
    | | | | |||||||   ||||| ||| ||||||||| ||||||| |||||||| |||||||||  |||||||||||||||    
T  7237259 ggaccgccccttctgttccagtcaatctgaagttgtcatgtatacagagtctctgctttcactccttggtgacaatgagca 7237179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 7771745 - 7771840
Alignment:
Q  17 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctcaaaatgccattcctgatca 112  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| ||    ||||||||||||||||    
T  7771745 taatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttgatgccattcctgatca 7771840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 7790430 - 7790525
Alignment:
Q  17 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctcaaaatgccattcctgatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||| ||    ||||||||||||||||    
T  7790430 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatgccattcctgatca 7790525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 158 - 326
Target Start/End: Original strand, 7823427 - 7823598
Alignment:
Q  158 ccctatgtattctacagaaaatggtga---tattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcac 254  Q
    ||||||||| || ||| ||||||||||   |||||||| || |  || |||| ||| |||||||||||| |||   ||||| ||| | |||| ||||||     
T  7823427 ccctatgtactccacaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttagagcatcaa 7823526  T
Q  255 tccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgag 326  Q
    || ||||| |||||||||||| |||||||| |||||||||||||||| ||||||||| |||| |||||||||    
T  7823527 tcattctgtaacagtccatccaaagttgtcatgtataccgagtctctgctttcactccctggggacaatgag 7823598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 49043878 - 49043810
Alignment:
Q  18 aatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgtt 86  Q
    ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  49043878 aatgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 326
Target Start/End: Original strand, 7801095 - 7801266
Alignment:
Q  158 ccctatgtattctacagaaaatggtga---tattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcac 254  Q
    ||||||||| || ||| ||||||||||   |||||||| || |  || |||| ||| |||||||||||| |||   ||||| ||| | |||  ||||||     
T  7801095 ccctatgtactccacaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttaaagcatcaa 7801194  T
Q  255 tccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgag 326  Q
    || ||||| |||||||||||| |||||||| |||||||||||||||| ||||||||| |||| |||||||||    
T  7801195 tcattctgtaacagtccatccaaagttgtcatgtataccgagtctctgctttcactccctggggacaatgag 7801266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 48864396 - 48864460
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 92  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||    
T  48864396 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcct 48864460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 7773543 - 7773464
Alignment:
Q  10 ataatactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||  | |||||||||    
T  7773543 ataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctt 7773464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 45371781 - 45371710
Alignment:
Q  21 gatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 92  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||  |||||||||||    
T  45371781 gatacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcct 45371710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 48853033 - 48853103
Alignment:
Q  19 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    |||||||| ||||||||||||| ||||||||||||||||||  |||||| ||||||||||| |||||||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 48853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 326
Target Start/End: Original strand, 7813935 - 7814106
Alignment:
Q  158 ccctatgtattctacagaaaatggtga---tattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcac 254  Q
    ||||||||| || ||| ||||||||||   |||||||| || |  || |||| ||| |||||||||||| |||   ||||| ||| | |||| ||||||     
T  7813935 ccctatgtactccacaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttagagcatcaa 7814034  T
Q  255 tccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgag 326  Q
    || ||||| |||  ||||||| |||||||| |||||||||||||||| ||||||||| |||| |||||||||    
T  7814035 tcattctgtaacgctccatccaaagttgtcatgtataccgagtctctgctttcactccctggggacaatgag 7814106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 7237454 - 7237378
Alignment:
Q  17 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctc 93  Q
    |||||||||||||| ||||||||||||||||||||||||| || ||||||  |||||||| || ||||| |||||||    
T  7237454 taatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgtgcttcctc 7237378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 7878733 - 7878805
Alignment:
Q  17 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| || |||| ||| || |||||||||    
T  7878733 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctt 7878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 48903399 - 48903507
Alignment:
Q  150 tactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 249  Q
    ||||||||||| || | |||| || |||||||||| || ||||||| | | | |||||||| ||||||||||||||||||||||||||||||  ||| |     
T  48903399 tactttcacccaatatgttcttcaaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagt 48903498  T
Q  250 atcactcct 258  Q
    |||||||||    
T  48903499 atcactcct 48903507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 49038578 - 49038518
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 88  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  49038578 ttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 7908656 - 7908747
Alignment:
Q  21 gatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctcaaaatgccattcctgatca 112  Q
    |||||| |||||||||||||||||||||||||||||||| |||| || |||| ||| || ||||||||| ||    ||||||||||||||||    
T  7908656 gatacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccattcctgatca 7908747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 48147413 - 48147362
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagac 79  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  48147413 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagac 48147362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 45384592 - 45384528
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 92  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||| ||||| | ||||||||||    
T  45384592 ttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttcct 45384528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 49048264 - 49048204
Alignment:
Q  19 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagac 79  Q
    |||||| | |||||||||||||||||||||| || |||||| |||||||||||||||||||    
T  49048264 atgatatagttgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagac 49048204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 50666666 - 50666734
Alignment:
Q  18 aatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgtt 86  Q
    ||||||||||||||| ||||||||||| |||||||||||||| |||| || |||||||| || ||||||    
T  50666666 aatgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 7813836 - 7813899
Alignment:
Q  26 aattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||| ||| || |||||||||    
T  7813836 aattgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctt 7813899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 45365931 - 45365856
Alignment:
Q  17 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 92  Q
    |||||||||| ||||||||||||||||||||||||| ||||||  |||||| ||||| ||||| |  |||||||||    
T  45365931 taatgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcct 45365856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 48870915 - 48870982
Alignment:
Q  22 atacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||| ||||| ||||| |||||||||    
T  48870915 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctt 48870982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 48876219 - 48876286
Alignment:
Q  22 atacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||| ||||| ||||| |||||||||    
T  48876219 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctt 48876286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 48886601 - 48886668
Alignment:
Q  22 atacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||| ||||| ||||| |||||||||    
T  48886601 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctt 48886668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 48156129 - 48156065
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 92  Q
    ||||||||||||||||||| |||||||||||| |||| || |||||||| || ||||| ||||||    
T  48156129 ttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcct 48156065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 48903316 - 48903364
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaa 76  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaa 48903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 7773441 - 7773394
Alignment:
Q  148 actactttcaccctatgtattctacagaaaatggtgatattattggaa 195  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  7773441 actactttcaacctatatattctacaaaaaatggtgatattattggaa 7773394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 7800996 - 7801059
Alignment:
Q  26 aattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    |||||||||||||||| ||||||| ||||||||| ||||||| |||| ||| || |||||||||    
T  7800996 aattgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 7801059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 273
Target Start/End: Original strand, 7905010 - 7905133
Alignment:
Q  150 tactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 249  Q
    ||||||||||||||||| |||||| | |||||||||||||| |||  | ||  ||||| || |||||| |||||||||||  |||| ||| | ||| |||    
T  7905010 tactttcaccctatgtactctacaaagaatggtgatattatcggaggaaatcttggtagtagattggtaaagtataatgatgaagggcagctattaaggc 7905109  T
Q  250 atcactccttctgcaacagtccat 273  Q
    ||| |||| |||| || |||||||    
T  7905110 atcgctccatctgtaatagtccat 7905133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 7237158 - 7237112
Alignment:
Q  333 caagaacaatgaggttgtgaaatattctacttcattgttttatttat 379  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  7237158 caagaacaatgatgttgtgaaatattctccttcattgttttctttat 7237112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 48899089 - 48899131
Alignment:
Q  16 ctaatgatacaattgaaatatgggtgatgaaagaatacaaagt 58  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  48899089 ctaatgatacagttgaaatatgggtgatgaaagaatataaagt 48899131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  37 gggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgtt 86  Q
    |||||||||||||||||||| || ||||||| ||||||||||| ||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 48861640 - 48861697
Alignment:
Q  19 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaa 76  Q
    |||||||| ||||||||||||| || ||||||||||||||| ||| ||| ||||||||    
T  48861640 atgatacatttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaa 48861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 7787147 - 7787235
Alignment:
Q  333 caagaacaatgaggttgtgaaatattctacttcattgttttatttatgttgaattatgaactcttgagtcgctgcatttgtaacatgtg 421  Q
    |||||||||||||||||||||||| |||  || |   |||  || || ||| ||||||||||||||||| |||||||||||||| ||||    
T  7787147 caagaacaatgaggttgtgaaatactctcatttaccatttccttcatattgtattatgaactcttgagtggctgcatttgtaacttgtg 7787235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 45384364 - 45384320
Alignment:
Q  284 cgtgtataccgagtctctactttcactctctggtgacaatgagca 328  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||    
T  45384364 cgtgtatacagagtctctcctttcactttctggtgacaatgagca 45384320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 50672860 - 50672908
Alignment:
Q  29 tgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaag 77  Q
    ||||||||||||||||||| |||||||| || ||||||| |||||||||    
T  50672860 tgaaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaag 50672908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 48147304 - 48147221
Alignment:
Q  179 tggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctg 262  Q
    |||||| |||||||||| | ||||||  ||| ||||| |||||||||| |||||||||||| || ||| |||| |||| |||||    
T  48147304 tggtgacattattggaacaaatggtgaaactgaattgttgaagtataacgacaaaggacagcttctagagcataactcattctg 48147221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 48871027 - 48871106
Alignment:
Q  170 tacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 249  Q
    |||| ||| ||||||||||||||||  | || |||||| |  ||||||||||||| ||||||| |||||||| |||||||    
T  48871027 tacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggc 48871106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 48876331 - 48876410
Alignment:
Q  170 tacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 249  Q
    |||| ||| ||||||||||||||||  | || |||||| |  ||||||||||||| ||||||| |||||||| |||||||    
T  48876331 tacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggc 48876410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 48886713 - 48886792
Alignment:
Q  170 tacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 249  Q
    |||| ||| ||||||||||||||||  | || |||||| |  ||||||||||||| ||||||| |||||||| |||||||    
T  48886713 tacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggc 48886792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 45365804 - 45365726
Alignment:
Q  180 ggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactcct 258  Q
    |||||||||||||||| | ||| |  || || ||||||||||||||||||  |||||||||| ||||| |||| |||||    
T  45365804 ggtgatattattggaacagatgatcttaatagattggtgaagtataatgatgaaggacagttgttaggacatcgctcct 45365726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 4030373 - 4030311
Alignment:
Q  179 tggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtt 241  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  4030373 tggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagtt 4030311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 4031626 - 4031577
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaag 77  Q
    ||||||||||||| ||||||||||||||| || ||||||| |||||||||    
T  4031626 ttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 15349244 - 15349305
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    |||||||||||||||||||||||||||||||| | || || ||||| ||||  |||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 15349305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 4962219 - 4962180
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtc 67  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  4962219 ttgaaatatgggtgatgaaagaatacaaactgcattcgtc 4962180  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 11024207 - 11024146
Alignment:
Q  24 acaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgt 85  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||    
T  11024207 acaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 11005637 - 11005579
Alignment:
Q  19 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaag 77  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  11005637 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaag 11005579  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 47451611 - 47451536
Alignment:
Q  17 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 92  Q
    |||||||| | |||||||||||||||||||||||||||||||  ||||||| |||   ||||| ||||||||||||    
T  47451611 taatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcct 47451536  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 47451496 - 47451412
Alignment:
Q  168 tctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatc 252  Q
    |||||| ||| ||||||||||||||||| | ||| || |||   |||||| ||||||||||||||||||||||| |||| |||||    
T  47451496 tctacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatc 47451412  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 11015191 - 11015152
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtc 67  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  11015191 ttgaaatatgggttatgaaagaatacaaagtgcattcgtc 11015152  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 29350898 - 29350960
Alignment:
Q  179 tggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtt 241  Q
    |||||||||||||||||   ||||||||||| |||||||||||||| ||||||||||||||||    
T  29350898 tggtgatattattggaacggatggtggtactgaattggtgaagtattatgacaaaggacagtt 29350960  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 9120112 - 9120160
Alignment:
Q  16 ctaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattc 64  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9120112 ctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattc 9120160  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 42562033 - 42561969
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 92  Q
    |||| ||||||||||||||||||||||||||| |||| || ||||||||||  ||||||||||||    
T  42562033 ttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttcttcct 42561969  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 179408 - 179455
Alignment:
Q  17 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattc 64  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  179408 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattc 179455  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 42561930 - 42561842
Alignment:
Q  170 tacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactcct 258  Q
    |||| ||||||||||||||||||||| | ||||||||||   ||||||||| ||||| ||||||||  ||||| ||| |||| ||||||    
T  42561930 tacaaaaaatggtgatattattggaacagatggtggtaccggattggtgaaatataacgacaaaggggagtttctagagcataactcct 42561842  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 29688479 - 29688551
Alignment:
Q  17 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 89  Q
    ||||| |||| |||||||||||||||||||| ||||||| ||| | ||||| ||||| ||||| || ||||||    
T  29688479 taatggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctt 29688551  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 9120272 - 9120301
Alignment:
Q  212 attggtgaagtataatgacaaaggacagtt 241  Q
    ||||||||||||||||||||||||||||||    
T  9120272 attggtgaagtataatgacaaaggacagtt 9120301  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 48884176 - 48884247
Alignment:
Q  19 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttc 90  Q
    |||||| | ||||||||| |||||||||||||||||||||| ||  ||| ||||||||||| ||||||||||    
T  48884176 atgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttcttc 48884247  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 48884291 - 48884382
Alignment:
Q  170 tacagaaaatggtgatattattggaa---aatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactcct 258  Q
    |||| ||| |||||||||||||||||   |  ||||| || ||| |||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  48884291 tacaaaaagtggtgatattattggaatagatcatggtcgtgctagattgatgaagtataatgataaaggacagttgttagggcatcactcct 48884382  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 21979325 - 21979263
Alignment:
Q  31 aaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctc 93  Q
    |||||||||||||||||||||||||||||  ||| || |||| ||||| ||||||||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttcttcctc 21979263  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 21016182 - 21016233
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagac 79  Q
    ||||||||||||| |||||||||||||||||  ||||||| |||||||||||    
T  21016182 ttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagac 21016233  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 21979195 - 21979147
Alignment:
Q  212 attggtgaagtataatgacaaaggacagtttttagggcatcactccttc 260  Q
    |||||||||||| ||||| ||||||||||| |||||||| |||| ||||    
T  21979195 attggtgaagtacaatgataaaggacagttgttagggcagcactacttc 21979147  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  33 atatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 88  Q
    |||||||| ||| |||||||||||||| ||||||| |||||||| || ||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 24416139 - 24416199
Alignment:
Q  28 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 88  Q
    |||| ||||||||||||||||||||||||| | | || || |||||||| || ||||||||    
T  24416139 ttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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