View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_high_20 (Length: 399)
Name: NF5824_high_20
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 6942563 - 6942954
Alignment:
| Q |
1 |
agtaaacgcaaataatgaacacatgatatttggtaatgaagttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6942563 |
agtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatg |
6942662 |
T |
|
| Q |
101 |
agagaaatagtaatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccctgaaccgtacccccagtcgccatcacgcaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6942663 |
agagaaagagtaatgtttacaatgcacaacttgtgtataaacactattgtccagattacaacatcaaccctgaaccgtacccccagtcgccatcatgcaa |
6942762 |
T |
|
| Q |
201 |
caaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaannnnnnnctttatcatcatctactcatctttcctcca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6942763 |
caaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaatttttttctttatcatcatctactcatctttcctcca |
6942862 |
T |
|
| Q |
301 |
attcttatcactttgagaactaaggcaggtgttcaatttgttcttttttcatcagtcttcaattcagcgagagatttgaaatggaaatcata |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
6942863 |
attcttatcactttgagaactaaggcaggtgtaaaatttgttcttttttcatcagtcttcaattcagcgagagatttgaaattgaaaccata |
6942954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 392
Target Start/End: Original strand, 6939399 - 6939779
Alignment:
| Q |
12 |
ataatgaacacatgatatttggtaatgaagttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaatagt |
111 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6939399 |
ataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagt |
6939498 |
T |
|
| Q |
112 |
aatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccctgaaccgtacccccagtcgccatcacgcaacaaactatgat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6939499 |
aatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccgtgaaccgtacccccagtcgccatcacgcaacaaactatgat |
6939598 |
T |
|
| Q |
212 |
accattgttccttatgctcatttcccagtctttaccctctttgaactttgaannnnnnnctttatcatcatctactcatctttcctccaattcttatcac |
311 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6939599 |
accattgttccttatgctccattcccagtctttaccctctttgaactttgaatttttttctttatcatcatctactcatatttcctccaattcttatcac |
6939698 |
T |
|
| Q |
312 |
tttgagaactaaggcaggtgttcaatttgttcttttttcatcagtcttcaattcagcgagagatttgaaatggaaatcata |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
6939699 |
tttgagaactaaggcaggtgttcaatttgttcttttttcatcagtcttcaattcagcgagagatttgaaattgaaaccata |
6939779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 6788160 - 6787945
Alignment:
| Q |
1 |
agtaaacgcaaataatgaacacatgatatttggtaatgaagttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatg |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6788160 |
agtaaacgcaaataataaacacacgatgtttggtaacgaagttcggccaatattgcctacatctccgactgcagagaagctgcagttcctttttattatg |
6788061 |
T |
|
| Q |
101 |
agagaaatagtaatgtttacaatgcacaacgtgtgta----taaaaactattgtccagattacaacatcaaccctgaaccgtacccccagtcgccatcac |
196 |
Q |
| |
|
|| |||| | ||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
6788060 |
agtgaaagattaaggtttacaatgcacaacttgtgtataattaaacactattgtccagattacaacatcacccctgaaccatacccccagtcgccattac |
6787961 |
T |
|
| Q |
197 |
gcaacaaactatgata |
212 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6787960 |
acaacaaactatgata |
6787945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 8467044 - 8467207
Alignment:
| Q |
29 |
tttggtaatgaagttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaatagtaatgtttacaatgcaca |
128 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||| | || ||||||| |||||| |
|
|
| T |
8467044 |
tttggtaacgaagttcggccaatattgcctacgtctccgactgtagagaagctgcagttcctttgtattatcaatgaaagattagggtttacagtgcaca |
8467143 |
T |
|
| Q |
129 |
acgtgtgtataaaaactattgtccagattacaacatcaaccctgaaccgtacccccagtcgcca |
192 |
Q |
| |
|
|| | | |||| |||| | | ||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
8467144 |
acttatacttaaatactacaattctgattacaacatcatcccagaaccgtaccccctgtcgcca |
8467207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 392
Target Start/End: Complemental strand, 6787849 - 6787748
Alignment:
| Q |
291 |
ctttcctccaattcttatcactttgagaactaaggcaggtgttcaatttgttcttttttcatcagtcttcaattcagcgagagatttgaaatggaaatca |
390 |
Q |
| |
|
||||||| |||||||||||| |||| |||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||| ||| |||| || |
|
|
| T |
6787849 |
ctttccttcaattcttatcagtttgggaacataggcaagtgttcaatttgttctcgcttaatcagtcttcaattcagcgagagatttgcaattgaaacca |
6787750 |
T |
|
| Q |
391 |
ta |
392 |
Q |
| |
|
|| |
|
|
| T |
6787749 |
ta |
6787748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 28362734 - 28362649
Alignment:
| Q |
14 |
aatgaacacatgatatttggtaatgaagttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat |
99 |
Q |
| |
|
|||||||||| ||| |||||||| ||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
28362734 |
aatgaacacacgatgtttggtaacaaagtttaaccaattttgcctatgtctcagactgcagagcagctgcagttcctttgtattat |
28362649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 6522105 - 6522163
Alignment:
| Q |
41 |
gttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat |
99 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||||| ||| ||||| |||||| |
|
|
| T |
6522105 |
gttcagccaattgtgcctacgtctcagactgcagagcagctgtagtacctttctattat |
6522163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 1569806 - 1569745
Alignment:
| Q |
38 |
gaagttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat |
99 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| || | ||||||||| ||| |||||| |
|
|
| T |
1569806 |
gaagttcagacaattttgcctacgtctccgactgcaaaggaactgcagttcatttgtattat |
1569745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 48681625 - 48681555
Alignment:
| Q |
29 |
tttggtaatgaagttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat |
99 |
Q |
| |
|
|||||||||||||||| ||||| ||| || ||||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
48681625 |
tttggtaatgaagttcggccaattttgtctgcgtctccgaatgcagagtggctgcagttcctttatattat |
48681555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 6683704 - 6683750
Alignment:
| Q |
53 |
ttgcctacgtctccgactgcagagcagctgcagttcctttttattat |
99 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
6683704 |
ttgcctatatcttcgactgcagagcagctgcagttcctttgtattat |
6683750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 33720249 - 33720175
Alignment:
| Q |
29 |
tttggtaatgaagttcaaccaatattgcctacgtctccgactgca----gagcagctgcagttcctttttattat |
99 |
Q |
| |
|
|||| ||| ||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
33720249 |
tttgataacgaagttcggccaattttgcctacatctccgactgcagagcgagcagctgcagttcctttctattat |
33720175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 34564910 - 34564829
Alignment:
| Q |
18 |
aacacatgatatttggtaatgaagttcaaccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat |
99 |
Q |
| |
|
|||||| ||| |||||||| ||||||| |||| ||||||||||||||||||| ||||| | || || |||||| |||||| |
|
|
| T |
34564910 |
aacacacgatgtttggtaacgaagttcggccaaatttgcctacgtctccgactgtagagctggtgtaggtcctttctattat |
34564829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University