View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_high_28 (Length: 317)
Name: NF5824_high_28
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 26616878 - 26616606
Alignment:
| Q |
1 |
taaattaatagtatatatagtacatgaaataaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaatatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26616878 |
taaattaatagtatatatagtacatgaaattaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaatatagt |
26616779 |
T |
|
| Q |
101 |
aatagtagaaatgttagtatgctactttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26616778 |
aatagtagaaatgttagtatgctactttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaa |
26616679 |
T |
|
| Q |
201 |
ttacgtaaatcacgatttaatttatgttaatannnnnnnnnatttcaacttttctctcttcctcttctcgtcc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26616678 |
ttacgtaaatcacgatttaatttatgttaatatttttttttatttcaacttttctctcttcctcttctcgtcc |
26616606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 26722806 - 26722534
Alignment:
| Q |
1 |
taaattaatagtatatatagtacatgaaataaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaatatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722806 |
taaattaatagtatatatagtacatgaaattaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaatatagt |
26722707 |
T |
|
| Q |
101 |
aatagtagaaatgttagtatgctactttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722706 |
aatagtagaaatgttagtatgctactttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaa |
26722607 |
T |
|
| Q |
201 |
ttacgtaaatcacgatttaatttatgttaatannnnnnnnnatttcaacttttctctcttcctcttctcgtcc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26722606 |
ttacgtaaatcacgatttaatttatgttaatatttttttttatttcaacttttctctcttcctcttctcgtcc |
26722534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 27668866 - 27668995
Alignment:
| Q |
19 |
agtacatgaaataaaaataaatga--ttgttctgtgag-ctccaaaatcagacaagaataggaaagtttaaaagcggaata-tagtaatagtagaaatgt |
114 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| || | |||| ||||| |||||||| ||||||||| |
|
|
| T |
27668866 |
agtatatgaaataaaaataaatgtagttgttctgtgggactccaaaatcagacaagaataggaaatttaagaagcagaataatagtaataatagaaatgt |
27668965 |
T |
|
| Q |
115 |
tagtatgctactttcttcatcatttgtgtt |
144 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| |
|
|
| T |
27668966 |
tagtatcctactatcttcatcatttatgtt |
27668995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 26660848 - 26660723
Alignment:
| Q |
27 |
aaataaaaataaatga--ttgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaata------tagtaatagtagaaatgttagt |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| || | |||| ||||| |||||||| ||||||||||||| |
|
|
| T |
26660848 |
aaataaaaataaatgaagttgttttgtggactccaaaatcagacaaaaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagt |
26660749 |
T |
|
| Q |
119 |
atgctactttcttcatcatttgtgtt |
144 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26660748 |
atgctactttcttcatcatttgtgtt |
26660723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 26766819 - 26766694
Alignment:
| Q |
27 |
aaataaaaataaatga--ttgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaata------tagtaatagtagaaatgttagt |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| || | |||| ||||| |||||||| ||||||||||||| |
|
|
| T |
26766819 |
aaataaaaataaatgaagttgttttgtggactccaaaatcagacaaaaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagt |
26766720 |
T |
|
| Q |
119 |
atgctactttcttcatcatttgtgtt |
144 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26766719 |
atgctactttcttcatcatttgtgtt |
26766694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 26810630 - 26810582
Alignment:
| Q |
96 |
atagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtt |
144 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
26810630 |
atagtaatagtagaaatgttagtatgccactaccttcatcattcgtgtt |
26810582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 18823918 - 18823839
Alignment:
| Q |
153 |
aaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaattacgtaaatcacgatttaatttatgttaata |
232 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| | | ||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
18823918 |
aaaaataccccaactttccttttgaaaaacaattaaaaagaagggtaaatacataaatcatgatttaatttatgttaata |
18823839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 18823239 - 18823311
Alignment:
| Q |
158 |
taccccaactttcctttttaaaaacaagtaaagatgaagg-taattacgtaaatcacgatttaatttatgtta |
229 |
Q |
| |
|
||||||| |||||||||| ||||||| || ||| ||||| ||| || |||||||| |||||||||||||||| |
|
|
| T |
18823239 |
taccccagctttccttttggaaaacaattagagaagaagggtaaatatgtaaatcatgatttaatttatgtta |
18823311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 18343355 - 18343275
Alignment:
| Q |
153 |
aaaaataccccaactttcctttttaaaaacaagtaaagatgaa-ggtaattacgtaaatcacgatttaatttatgttaata |
232 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||||| || || || |||||||| | |||||||| |||||||| |
|
|
| T |
18343355 |
aaaaacaccccaactttcctttttaaaaacaagtagaaatgaagggcaaatatgtaaatcatggtttaatttgtgttaata |
18343275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University