View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_high_30 (Length: 293)
Name: NF5824_high_30
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 87 - 279
Target Start/End: Original strand, 51035211 - 51035398
Alignment:
| Q |
87 |
aatttggatacgcaaaagaaaaagggtattcgattcaattcaattcaattcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtca |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51035211 |
aatttggatacgcaaaagaaaaagggtattc-----aattcaattcaattcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtca |
51035305 |
T |
|
| Q |
187 |
tcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttcaagttcatgaatgtccttcaactctacataaccc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
51035306 |
tcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttcaagttcgtgagtgtccttcaactctacataaccc |
51035398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 278
Target Start/End: Original strand, 51031012 - 51031156
Alignment:
| Q |
134 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
233 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | | |
|
|
| T |
51031012 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
51031111 |
T |
|
| Q |
234 |
gaacattggttcaagttcatgaatgtccttcaactctacataacc |
278 |
Q |
| |
|
||||||||||||||| | ||| || |||||||||| ||||||| |
|
|
| T |
51031112 |
gaacattggttcaaggttgtgagtggtcttcaactctgcataacc |
51031156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 278
Target Start/End: Original strand, 51063764 - 51063908
Alignment:
| Q |
134 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
233 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | | |
|
|
| T |
51063764 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
51063863 |
T |
|
| Q |
234 |
gaacattggttcaagttcatgaatgtccttcaactctacataacc |
278 |
Q |
| |
|
||||||||||||||| | ||| || |||||||||| ||||||| |
|
|
| T |
51063864 |
gaacattggttcaaggttgtgagtggtcttcaactctgcataacc |
51063908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 40616975 - 40616879
Alignment:
| Q |
149 |
taggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttc |
245 |
Q |
| |
|
||||||| ||||| |||||||| ||| ||| ||| |||| |||||||| ||||||| ||| ||||||||| || ||||| | | ||||||||||||| |
|
|
| T |
40616975 |
taggagtccatgtaaaaaaccagtaaacacccttctcattacatggaagagctccagctctaaaacctttaccaaagtattgcatgaacattggttc |
40616879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University