View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_high_32 (Length: 288)
Name: NF5824_high_32
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 11612930 - 11612657
Alignment:
| Q |
1 |
aaaggaccttaagactaaaaggcaaaccaaacatgcagaagaaactagatcaatggaaataatttacaaaatcaattagagtgaggacaaaagcagaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11612930 |
aaaggaccttaagactaaaaggcaaaccaaacatgcagaagaaactagatcaatggaaatactttacaaaatcaattagagtgaggacaaaagcagaagc |
11612831 |
T |
|
| Q |
101 |
tagattacatcataccaaactatatagaaacatgaaaattaaaaaaggcttcatgttgaagataaagaccagctgaactgtaacaggtccactctcacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11612830 |
tagattacatcataccaaactatatagaaacatgaaaattaaaaaaggcttcatgttgaagataaagaccagctgaactgtaacaggtccactctcacag |
11612731 |
T |
|
| Q |
201 |
tcataccaaccaaccataacaaaatctttaacattaagcaatttctaagataacccttgtaagcttatcctttg |
274 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
11612730 |
tcacaccaaccaaccataacaaaatctttaacattaagcaatttctaatgtaacccttttaagcttatcctttg |
11612657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University