View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_high_8 (Length: 556)
Name: NF5824_high_8
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Original strand, 26106484 - 26107026
Alignment:
| Q |
16 |
aaaaagttcatcaattttatcttttttaagnnnnnnnn--tgtttatcaattttccccgccgtgactctatctcacgtccaaattatatatataaaggac |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26106484 |
aaaaatttcatcaattttatcttttttaagaaaaaaaaaatgtttatcaattttccccgccgtgactctatctcacgtccaaattatatatataaaggac |
26106583 |
T |
|
| Q |
114 |
ttaattatattttaaaataataaaaatgagattatgttgcatggtgataagagtcaaaggacataaccaaaggattaaactaaaattattaataaatgaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26106584 |
ttaattatattttaaaataataaaaatgagattatgttgcatggtgataagagtcaaaggacataaccaaatgattaaactaaaattattaataaatgaa |
26106683 |
T |
|
| Q |
214 |
atttagttaacgtaccattttcatttacttagacaataataactagact--atttattttcaatcgaaatatcatattaattaagact--ttcttttgag |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26106684 |
atttagttaacgtaccattttcatttacttagacaataataactagactttatttattttcaatcgaaatatcatattaattaagactctttcttttgag |
26106783 |
T |
|
| Q |
310 |
gaattggagggttaaaaccatagtatgattatatgaaatgaaatggcaaaagttgaaaagaatgtttcatgtcatcaaacagattttgataaagaaatta |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26106784 |
gaattggagggttaaaaccatagtatgattatatgaaatgaaatggcaaaagttgaaaagaatgtttcatgtcatctgacagattttgataaagaaatta |
26106883 |
T |
|
| Q |
410 |
caaagtactttgtgaacaatattgcacaagaaatcacaaagtaatagcttacaatacacagatgccagcaaatagtagatacaatgtcaattacaatttc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26106884 |
caaagtactttgtgaacaatattgcacaagaaatcacaaagtaatagcttacaatacacagatgccagcaaataatagatacaatgtcaattacaatttc |
26106983 |
T |
|
| Q |
510 |
ttttttggactaagtttacaattttaatgttttcatctcactc |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
26106984 |
ttttttggactaagtttacaattttaatgttgtcatcacactc |
26107026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University