View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5824_low_1 (Length: 1111)

Name: NF5824_low_1
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5824_low_1
NF5824_low_1
[»] chr5 (20 HSPs)
chr5 (393-761)||(30301521-30301888)
chr5 (826-1103)||(30301935-30302212)
chr5 (186-292)||(30301315-30301421)
chr5 (18-104)||(30301147-30301233)
chr5 (187-266)||(18638727-18638806)
chr5 (186-256)||(3722972-3723042)
chr5 (186-264)||(27340974-27341052)
chr5 (187-263)||(3155108-3155184)
chr5 (186-265)||(33626525-33626604)
chr5 (186-265)||(33743220-33743299)
chr5 (186-256)||(4878170-4878240)
chr5 (186-256)||(21062887-21062957)
chr5 (186-264)||(34952293-34952371)
chr5 (189-253)||(8725315-8725379)
chr5 (186-262)||(39840593-39840669)
chr5 (186-256)||(20125495-20125565)
chr5 (196-265)||(20591361-20591430)
chr5 (322-363)||(30301451-30301491)
chr5 (210-256)||(19867503-19867549)
chr5 (210-256)||(31708461-31708507)
[»] chr4 (19 HSPs)
chr4 (905-1103)||(23062148-23062346)
chr4 (905-1103)||(32880787-32880985)
chr4 (186-264)||(11012230-11012308)
chr4 (186-263)||(34114006-34114083)
chr4 (197-256)||(8906360-8906419)
chr4 (186-256)||(10096638-10096708)
chr4 (186-265)||(42882559-42882639)
chr4 (189-256)||(42516742-42516809)
chr4 (201-256)||(50159054-50159109)
chr4 (186-256)||(39067851-39067921)
chr4 (186-256)||(4514161-4514231)
chr4 (723-761)||(30106158-30106196)
chr4 (215-264)||(38674005-38674054)
chr4 (211-264)||(41154158-41154211)
chr4 (187-256)||(45274369-45274438)
chr4 (186-234)||(17363335-17363383)
chr4 (186-234)||(31147336-31147384)
chr4 (210-256)||(47540264-47540310)
chr4 (186-223)||(46912728-46912765)
[»] chr2 (9 HSPs)
chr2 (905-1103)||(28592755-28592953)
chr2 (200-263)||(2308213-2308276)
chr2 (186-256)||(40496455-40496525)
chr2 (186-264)||(42665700-42665778)
chr2 (186-263)||(10389324-10389401)
chr2 (205-269)||(42554898-42554962)
chr2 (186-224)||(25994206-25994244)
chr2 (186-263)||(11442777-11442854)
chr2 (186-263)||(36909732-36909809)
[»] chr6 (14 HSPs)
chr6 (905-1103)||(25907150-25907348)
chr6 (186-265)||(7693420-7693499)
chr6 (186-256)||(9200215-9200285)
chr6 (186-264)||(30622129-30622207)
chr6 (187-264)||(19788964-19789041)
chr6 (186-265)||(2333480-2333559)
chr6 (186-256)||(6158676-6158746)
chr6 (186-256)||(26860511-26860581)
chr6 (187-267)||(3712504-3712584)
chr6 (977-1053)||(13108960-13109035)
chr6 (710-760)||(15120656-15120706)
chr6 (187-264)||(28647323-28647400)
chr6 (186-234)||(3800699-3800747)
chr6 (202-256)||(18792328-18792382)
[»] chr8 (13 HSPs)
chr8 (911-1103)||(21279150-21279342)
chr8 (186-256)||(323976-324046)
chr8 (186-263)||(8074614-8074691)
chr8 (202-265)||(34996247-34996310)
chr8 (210-265)||(10653670-10653725)
chr8 (210-265)||(11155769-11155824)
chr8 (202-265)||(27631068-27631131)
chr8 (186-232)||(5642310-5642356)
chr8 (186-232)||(5644251-5644297)
chr8 (186-255)||(45081172-45081241)
chr8 (190-265)||(35594653-35594722)
chr8 (187-234)||(34564229-34564276)
chr8 (198-264)||(11789888-11789954)
[»] chr7 (17 HSPs)
chr7 (910-1103)||(9817000-9817193)
chr7 (910-1103)||(10718925-10719118)
chr7 (186-264)||(17500802-17500880)
chr7 (186-264)||(17552334-17552412)
chr7 (187-263)||(49089053-49089129)
chr7 (186-263)||(30391251-30391328)
chr7 (186-265)||(23761172-23761251)
chr7 (186-256)||(24267543-24267613)
chr7 (186-264)||(27070557-27070635)
chr7 (186-264)||(27207678-27207756)
chr7 (186-256)||(31009536-31009606)
chr7 (187-256)||(18067821-18067890)
chr7 (186-263)||(47644814-47644891)
chr7 (709-757)||(44415981-44416029)
chr7 (187-265)||(31436523-31436600)
chr7 (186-255)||(44196110-44196179)
chr7 (210-267)||(36186779-36186836)
[»] chr1 (28 HSPs)
chr1 (186-265)||(30530286-30530365)
chr1 (186-265)||(52417636-52417715)
chr1 (186-263)||(34002209-34002286)
chr1 (186-255)||(40139218-40139287)
chr1 (186-265)||(33669710-33669789)
chr1 (186-264)||(50884658-50884736)
chr1 (187-264)||(8464401-8464478)
chr1 (186-266)||(45470725-45470805)
chr1 (186-265)||(4511664-4511743)
chr1 (186-256)||(1724130-1724200)
chr1 (186-256)||(4154687-4154757)
chr1 (186-256)||(5975642-5975712)
chr1 (186-256)||(38233378-38233448)
chr1 (196-256)||(51250187-51250247)
chr1 (186-262)||(52369001-52369077)
chr1 (186-265)||(5315316-5315395)
chr1 (915-1103)||(15229734-15229922)
chr1 (212-263)||(21154354-21154405)
chr1 (210-265)||(24611973-24612028)
chr1 (186-256)||(15059729-15059799)
chr1 (186-256)||(44950317-44950387)
chr1 (199-256)||(52078539-52078596)
chr1 (709-761)||(19070949-19071001)
chr1 (709-761)||(19118839-19118891)
chr1 (186-266)||(41558098-41558178)
chr1 (186-265)||(49596346-49596425)
chr1 (186-265)||(50017310-50017389)
chr1 (543-616)||(41038752-41038825)
[»] scaffold0020 (1 HSPs)
scaffold0020 (186-265)||(156011-156090)
[»] chr3 (16 HSPs)
chr3 (186-265)||(23920402-23920481)
chr3 (201-268)||(42104536-42104603)
chr3 (187-264)||(18713709-18713786)
chr3 (186-265)||(11233918-11233997)
chr3 (186-265)||(42424336-42424415)
chr3 (187-265)||(22153970-22154048)
chr3 (186-262)||(47509037-47509113)
chr3 (186-265)||(35425559-35425638)
chr3 (188-255)||(37323774-37323841)
chr3 (200-266)||(4208114-4208180)
chr3 (186-262)||(12094280-12094356)
chr3 (709-760)||(17229130-17229181)
chr3 (196-263)||(43176310-43176377)
chr3 (200-262)||(31169450-31169512)
chr3 (186-256)||(53133844-53133914)
chr3 (187-232)||(55196441-55196486)
[»] scaffold0057 (1 HSPs)
scaffold0057 (186-256)||(21470-21540)
[»] scaffold0194 (1 HSPs)
scaffold0194 (186-234)||(29728-29776)
[»] scaffold0072 (1 HSPs)
scaffold0072 (186-266)||(14435-14515)
[»] scaffold0068 (1 HSPs)
scaffold0068 (709-761)||(58496-58548)
[»] scaffold0511 (1 HSPs)
scaffold0511 (202-256)||(11759-11813)
[»] scaffold0154 (1 HSPs)
scaffold0154 (202-256)||(4435-4489)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 393 - 761
Target Start/End: Original strand, 30301521 - 30301888
Alignment:
Q  393 gcagaagcttgctacaaaacaactcccaaacacataagggaattaaaccaccacttatgttagtttaaagaaaagttaatgtgattcgttttcaaccaca 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30301521 gcagaagcttgctacaaaacaactcccaaacacataagggaattaaaccaccacttatgttagtttaaagaaaagttaatgtgattcgttttcaaccaca 30301620  T
Q  493 aaaaagattaaagtttannnnnnnnnnnagaagatgttgaaccgcattccccttttgttgacgaatctgaacatttctttcccgccaaatgacccagaca 592  Q
    |||||||||||||||||           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30301621 aaaaagattaaagtttatttttttttt-agaagatgttgaaccgcattccccttttgttggcgaatctgaacatttctttcccgccaaatgacccagaca 30301719  T
Q  593 tatgaaaatcaaattagatgaagaactaaacagattcttttaaagaccgcctagtaatccaaattgaataagatgactttaacgtgttccggatatttct 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  30301720 tatgaaaatcaaattagatgaagaactaaacagattcttttaaagaccgcctagtaatccaaattgaagaagatgactttaacatgttccagatatttct 30301819  T
Q  693 aacaacataaaaattgaaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatc 761  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30301820 aacaacataaaaattgaaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatc 30301888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 826 - 1103
Target Start/End: Original strand, 30301935 - 30302212
Alignment:
Q  826 ctttcaaaatctctaaaaataatctccagatttctaacacaaaatctannnnnnnnnn-aaagtaaaacaaacataccctaaattttttcatgcttcaac 924  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||| |    
T  30301935 ctttcaaaatctctaaaaataatctccagatttctaacacaaaatctattttttttcttaaagtaaaacaaacataccctaaattttttcatgcttcagc 30302034  T
Q  925 cacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcnnnnnnntat 1024  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  30302035 cacgtcaagaaaga-ggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatat 30302133  T
Q  1025 tttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30302134 tttgagactttatttttagagagcaatagtactcgtgcaccggttggtaatataatagaaaaagttgtgtctgatgatg 30302212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 30301315 - 30301421
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactcttaatcaaaatatttccaatga 285  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30301315 gttttggacaaatgagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatcactactcttaatcaaaatatttccaatga 30301414  T
Q  286 tattaaa 292  Q
    |||||||    
T  30301415 tattaaa 30301421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 30301147 - 30301233
Alignment:
Q  18 tgaacctctttctataatggaaatttctctttagataattgttctaagacactttgatcaaacaaaaaatgatatttgtacaactac 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30301147 tgaacctctttcaataatggaaatttctctttagataattgttctaagacactttgatcaaacaaaaaatgatatttgtacaactac 30301233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 18638806 - 18638727
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctta 266  Q
    |||||||| |||||||| |||| |||| ||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  18638806 ttttggaccaataagaaaagagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctta 18638727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 3723042 - 3722972
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||||||  || |||||||||||||||||    
T  3723042 gttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatc 3722972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 27340974 - 27341052
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||| ||||  || ||| ||||||||||||| |||||||    
T  27340974 gttttggaccaataaaaagagagcaaatgaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactct 27341052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 3155108 - 3155184
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    |||||||| |||||||| |||| |||||||||||||||| |||||||| | ||||| ||||||| ||||| ||||||    
T  3155108 ttttggaccaataagaatagagaaaatgaaagttgtcattaaagttgtcatatatgattgtacaaatatcactactc 3155184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 33626604 - 33626525
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||| ||| |||| |||||||| |||| ||||||||||| |||||||||| ||||||||||||| ||||| | ||||||    
T  33626604 gttttagactaataggaagagagtaaataaaagttgtcattaaagttgttagatatggttgtacaaatatcacaactctt 33626525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 33743299 - 33743220
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||  ||| ||||||||| |||| ||||||||||||||||||||  || ||| ||||||||||||| ||||||||    
T  33743299 gttttggatcaatgagaagagagcaaataaaagttgtcatcaaagttgtaccaaatgattgtacatatatcactactctt 33743220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 4878240 - 4878170
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||  || |||| |||| |||||||||||||||||||||| ||||||||||||| |||||    
T  4878240 gttttggaccaatagaaatagagtaaataaaagttgtcatcaaagttgttagatatggttgtacaaatatc 4878170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 21062887 - 21062957
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||| | |||||||| |||| |||||||||||||||||||| ||||  || |||||||||||||||||    
T  21062887 gttttgggccaataagaaaagagcaaatgaaagttgtcatcaaaattgtaccaaatggttgtacatatatc 21062957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 34952371 - 34952293
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||||||||||||| |||| |||||||||||||||||| |  || ||  ||||||||||||| |||||||    
T  34952371 gttttggaccaataagaagagagaaaataaaagttgtcatcaaagttatcccaaataattgtacatatatcactactct 34952293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 8725379 - 8725315
Alignment:
Q  189 ttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatat 253  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||  || ||||||||| ||||    
T  8725379 ttggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtatatat 8725315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 39840669 - 39840593
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctact 262  Q
    ||||||||| ||| ||||||| | |||| |||||||||||||||||| | ||| || |||||||||||||| |||||    
T  39840669 gttttggaccaatgagaagagggaaaataaaagttgtcatcaaagttatcacaaatagttgtacatatatcactact 39840593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 20125495 - 20125565
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||| ||| ||| ||||||||| |||||||||||||||||||||||||  || || |||||| |||||||    
T  20125495 gtttttgaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatagttgtatatatatc 20125565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 20591430 - 20591361
Alignment:
Q  196 aataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||| ||||||  |||| ||||||||||| |||||||||| ||||||||||||| ||||| | ||||||    
T  20591430 aataaaaagagaataaataaaagttgtcattaaagttgttagatatggttgtacaaatatcacaactctt 20591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 30301451 - 30301491
Alignment:
Q  322 gtattggtaaccttatatgtgataataattctcttgtagcag 363  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  30301451 gtattggtaac-ttatatgtgataataattctcttgtagcag 30301491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 19867549 - 19867503
Alignment:
Q  210 aaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||||||||||||||||||| ||  |||| ||||||||||||    
T  19867549 aaatgaaagttgtcatcaaagttgtcaccaatggatgtacatatatc 19867503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 31708461 - 31708507
Alignment:
Q  210 aaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||||||| ||||||| ||||||| ||||||||||| |||||    
T  31708461 aaatgaaagttgtaatcaaagatgttacaaatggttgtacaaatatc 31708507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 1e-90; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 905 - 1103
Target Start/End: Complemental strand, 23062346 - 23062148
Alignment:
Q  905 aaattttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 1004  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23062346 aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 23062247  T
Q  1005 gtcaggttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23062246 gtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctggtgatg 23062148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 7e-86
Query Start/End: Original strand, 905 - 1103
Target Start/End: Original strand, 32880787 - 32880985
Alignment:
Q  905 aaattttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 1004  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||     
T  32880787 aaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaaggggtacgaattgctgatgaacaaggcatgc 32880886  T
Q  1005 gtcaggttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
    ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32880887 gtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 32880985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 11012230 - 11012308
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    |||| |||| |||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  11012230 gtttcggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcacatatgattgtacatatatcactactct 11012308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 34114083 - 34114006
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||||||| ||||||||||||| |||||||||||  ||||||||||||| || ||| ||||||||||||| ||||||    
T  34114083 gttttggaccaataagaagagagaaaatgaaagttaccatcaaagttgttccaaatgattgtacatatatcactactc 34114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 8906419 - 8906360
Alignment:
Q  197 ataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    |||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||    
T  8906419 ataagaagagagaaaatgaaaattgtcatcaaaattgtcacatatggttgtacatatatc 8906360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 10096708 - 10096638
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||  || |||| ||||||||||||    
T  10096708 gttttggaccaatgagaagagagcaaatgaaagttgtcatcaaagttgtaccaaatggctgtacatatatc 10096638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 42882559 - 42882639
Alignment:
Q  186 gttttggacaaataagaa-gagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||| |||| ||||  |||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  42882559 gttttggactaatgagaaagagaaaaaatgaaaattgtcatcaaagttgtcacacatggttgtacatatatcactactctt 42882639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 42516742 - 42516809
Alignment:
Q  189 ttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    |||||| ||| ||||||||  |||||||||||||||||||| |||| ||| |||||||||||||||||    
T  42516742 ttggaccaatgagaagagaaaaaatgaaagttgtcatcaaaattgtcacaaatggttgtacatatatc 42516809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 50159054 - 50159109
Alignment:
Q  201 gaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    |||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||    
T  50159054 gaagagagtaaataaaagttgtcattaaagttgttacatatggttgtacaaatatc 50159109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 39067921 - 39067851
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||  ||||||| |||| |||||||||||||||||||||| ||||||||| ||| |||||    
T  39067921 gttttggaccaatagaaagagagtaaataaaagttgtcatcaaagttgttagatatggttgaacaaatatc 39067851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 4514231 - 4514161
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||| ||||||||| |||||||| |||||||||||||||| |   || ||||||||||||||    
T  4514231 gttttggaccaatgagaagagagaaaatgaaaattgtcatcaaagttgtcatgaatagttgtacatatatc 4514161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 723 - 761
Target Start/End: Complemental strand, 30106196 - 30106158
Alignment:
Q  723 tcaaacataaggaggtaagatataaactagttaaaaatc 761  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  30106196 tcaaacataaggaggtaagatatgaactagttaaaaatc 30106158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 38674005 - 38674054
Alignment:
Q  215 aaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    |||||| |||| ||| |||||||||||||||||||||||||| |||||||    
T  38674005 aaagttctcattaaaattgttacatatggttgtacatatatcactactct 38674054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 41154158 - 41154211
Alignment:
Q  211 aatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||| ||||||||||||||||  || ||||||||||||||||| |||||||    
T  41154158 aatgaaaattgtcatcaaagttgtatcaaatggttgtacatatatcactactct 41154211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 45274369 - 45274438
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    |||||||| ||| | ||||||| |||||| ||||||||||||||||||  || || ||||||||||||||    
T  45274369 ttttggaccaatgaaaagagagaaaatgagagttgtcatcaaagttgtcccaaatagttgtacatatatc 45274438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 17363335 - 17363383
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgt 234  Q
    ||||||||| ||| | ||||||| |||||||||||||||||||||||||    
T  17363335 gttttggaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgt 17363383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 31147336 - 31147384
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgt 234  Q
    ||||||||| ||||||||||||| |||| |||||||||||| |||||||    
T  31147336 gttttggaccaataagaagagagaaaataaaagttgtcatcgaagttgt 31147384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 47540264 - 47540310
Alignment:
Q  210 aaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    |||| |||||||||||||||||||||| |||| |||||||| |||||    
T  47540264 aaataaaagttgtcatcaaagttgttagatatagttgtacaaatatc 47540310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 46912765 - 46912728
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtc 223  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  46912765 gttttggaccaataagaagagagaaaatgaaagttgtc 46912728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 1e-90; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 905 - 1103
Target Start/End: Complemental strand, 28592953 - 28592755
Alignment:
Q  905 aaattttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 1004  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592953 aaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 28592854  T
Q  1005 gtcaggttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
    ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592853 gtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 28592755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 2308276 - 2308213
Alignment:
Q  200 agaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||    
T  2308276 agaagagagaaaatgaaagttgtcatcaaagttgtcatatatggttgtacaaatatcactactc 2308213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 40496455 - 40496525
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| |||| |||||||| |||| |||||||||||||||||| ||| ||||||||||||| |||||    
T  40496455 gttttggaccaataggaagagagtaaataaaagttgtcatcaaagttattagatatggttgtacaaatatc 40496525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 42665778 - 42665700
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||| | || |||| |||||||||||||||||||||||||  || ||||||||||| ||||| |||||||    
T  42665778 gttttggaccaatgaaaaaagagcaaatgaaagttgtcatcaaagttgtaccaaatggttgtacaaatatcactactct 42665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 10389324 - 10389401
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||||||| ||| ||||||||| || ||||||| |||| |||||||||  || ||||||||||||||||| ||||||    
T  10389324 gttttggaccaatgagaagagagaaagtgaaagtcgtcaccaaagttgtcccaaatggttgtacatatatcactactc 10389401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 42554898 - 42554962
Alignment:
Q  205 agaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactcttaatc 269  Q
    |||| ||||||||||||| |||||||||||  || |||||||||| |||||| ||||||| ||||    
T  42554898 agagaaaatgaaagttgttatcaaagttgtaccaaatggttgtacttatatcactactctaaatc 42554962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 25994206 - 25994244
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtca 224  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  25994206 gttttggaccaataagaagagagaaaatgaaagttgtca 25994244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 11442777 - 11442854
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||||||| ||| | ||||||  |||| |||||||||| |||||||||  || |||| |||||||||||| ||||||    
T  11442777 gttttggaccaatgaaaagagaacaaattaaagttgtcaacaaagttgtaccaaatggatgtacatatatcactactc 11442854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 36909809 - 36909732
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||| ||| ||||||||||||| |||  ||||||||||||||||||||   | |||| |||||| ||||| ||||||    
T  36909809 gtttttgaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatggatgtacaaatatcactactc 36909732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 7e-86; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 7e-86
Query Start/End: Original strand, 905 - 1103
Target Start/End: Complemental strand, 25907348 - 25907150
Alignment:
Q  905 aaattttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 1004  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25907348 aaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 25907249  T
Q  1005 gtcaggttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
    ||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25907248 gtcaggtggcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 25907150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 7693420 - 7693499
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||||||||||||| |||| ||| ||||||||||||||||  || ||||||||||||||||| ||||||||    
T  7693420 gttttggaccaataagaagagagaaaataaaaattgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 7693499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 9200215 - 9200285
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||| |||||    
T  9200215 gttttggaccaataggaagagagtaaataaaagttgtcatcaaagttgttagatatggttgtacaaatatc 9200285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 30622129 - 30622207
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||||||  || || |||||||||||||| |||||||    
T  30622129 gttttggaccaataagaagagaaaaaatgaaagttgtcatcaaagttgtcccaaatagttgtacatatatcactactct 30622207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 19789041 - 19788964
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||  || ||||||||||||||||| |||||||    
T  19789041 ttttggaccaatgagaagagagaaaatcagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 19788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 2333480 - 2333559
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||||||||||||| |||| ||| ||||||||||| ||||| || ||| |||||||||||||  |||||||    
T  2333480 gttttggactaataagaagagagaaaataaaaattgtcatcaaaattgtttcaaatgattgtacatatatcagtactctt 2333559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 6158746 - 6158676
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||  ||||||| |||| ||||||||||| |||||||||| ||||||||||||| |||||    
T  6158746 gttttggaccaatagaaagagagtaaataaaagttgtcattaaagttgttagatatggttgtacacatatc 6158676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 26860581 - 26860511
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||  ||||||| |||| ||||||||||| |||||||||| ||||||||||||| |||||    
T  26860581 gttttggaccaatagaaagagagtaaataaaagttgtcattaaagttgttagatatggttgtacaaatatc 26860511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 3712584 - 3712504
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactcttaa 267  Q
    ||||| || |||| |||||||| |||| ||||||||||| ||| |||||| ||||||||||||| ||||| | ||||||||    
T  3712584 ttttgaacgaataggaagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatcacaactcttaa 3712504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 977 - 1053
Target Start/End: Complemental strand, 13109035 - 13108960
Alignment:
Q  977 gtacgaattgctgatgaacaaggcatgagtcaggttgcnnnnnnntattttgagactttatttttagagagcaatag 1053  Q
    ||||||||||||||||||||||||||| ||||| ||||       |||||||| ||||||||||||||||| |||||    
T  13109035 gtacgaattgctgatgaacaaggcatgcgtcagattgc-aaagaatattttgaaactttatttttagagagtaatag 13108960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 710 - 760
Target Start/End: Original strand, 15120656 - 15120706
Alignment:
Q  710 aaatctattttcttcaaacataaggaggtaagatataaactagttaaaaat 760  Q
    ||||||||||| ||||||||||||||||||||| |  ||||||||||||||    
T  15120656 aaatctatttttttcaaacataaggaggtaagacacgaactagttaaaaat 15120706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 28647400 - 28647323
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    |||||||| ||| ||||||||  |||| |||||||||| |||||||||  || |||| |||||||||||| |||||||    
T  28647400 ttttggaccaatgagaagagaacaaattaaagttgtcaacaaagttgtaccaaatggatgtacatatatcactactct 28647323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 3800699 - 3800747
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgt 234  Q
    ||||||||| ||| ||||||||| ||||||||||||||| |||||||||    
T  3800699 gttttggaccaatgagaagagagaaaatgaaagttgtcaacaaagttgt 3800747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 18792382 - 18792328
Alignment:
Q  202 aagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||| |||| ||||||||||| ||| |||||| ||||||||||||| |||||    
T  18792382 aagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatc 18792328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 5e-56; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 911 - 1103
Target Start/End: Complemental strand, 21279342 - 21279150
Alignment:
Q  911 tttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcagg 1010  Q
    |||||||| ||| |||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  21279342 tttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctggataatgatgaacgggtacgagttgctgatgaacaaggcatgtgtcagg 21279243  T
Q  1011 ttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
    ||||       |||||||| ||||||||||||||||| |||||||||| ||||||||||||  |||||||||||||| |||||| ||||||||    
T  21279242 ttgcaaaagaatattttgacactttatttttagagagtaatagtactcctgcaccggttgtagatataatagaaaaatttgtgtttgatgatg 21279150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 324046 - 323976
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |||||    
T  324046 gttttggaccaataagaagagagtaaataaaagttgtcatcaaagttgttagatatggttgtacagatatc 323976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 8074691 - 8074614
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||    
T  8074691 gttttgaaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcaaatatgattgtacatatatcactactc 8074614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 34996310 - 34996247
Alignment:
Q  202 aagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||| |||||||||||||||||||||||||  || || |||||||||||||| ||||||||    
T  34996310 aagagagcaaatgaaagttgtcatcaaagttgtaccaaatagttgtacatatatcactactctt 34996247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 10653725 - 10653670
Alignment:
Q  210 aaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||| | ||||||    
T  10653725 aaataaaagttgtcatcaaagttgttagatatggttgtacaaatatcacaactctt 10653670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 11155824 - 11155769
Alignment:
Q  210 aaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    |||| |||||||||||||||||||| ||| |||||| |||||||||| ||||||||    
T  11155824 aaataaaagttgtcatcaaagttgtcacaaatggttctacatatatcactactctt 11155769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 27631068 - 27631131
Alignment:
Q  202 aagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||| |||| | |||||||||||||||||| ||  ||||||||||||||||| ||||||||    
T  27631068 aagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatcactactctt 27631131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 5642356 - 5642310
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagtt 232  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  5642356 gttttggaccaataagaagagagaaaataaaagttgtcatcaaagtt 5642310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 5644297 - 5644251
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagtt 232  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  5644297 gttttggaccaataagaagagagaaaataaaagttgtcatcaaagtt 5644251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 45081172 - 45081241
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatat 255  Q
    ||||||||  |||| |||||||| |||| ||||||||||||||||| |||| ||||| ||||||| ||||    
T  45081172 gttttggatcaataggaagagagtaaataaaagttgtcatcaaagtcgttagatatgattgtacaaatat 45081241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 35594653 - 35594722
Alignment:
Q  190 tggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||       |||||||||||||||| ||||||||    
T  35594653 tggaccaataaaaagagagaaaatgaaagttgtcatcaaagttg------gtggttgtacatatatcactactctt 35594722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 34564276 - 34564229
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgt 234  Q
    ||||| |||||||| |||||||||||||||| |||| |||||||||||    
T  34564276 ttttgaacaaataaaaagagaggaaatgaaaattgttatcaaagttgt 34564229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 11789888 - 11789954
Alignment:
Q  198 taagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||||  ||||||||||||||||||||| | | ||| || |||||||| ||||| |||||||    
T  11789888 taagaagagaacaaatgaaagttgtcatcaaagatatcacaaatagttgtacaaatatcactactct 11789954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 910 - 1103
Target Start/End: Complemental strand, 9817193 - 9817000
Alignment:
Q  910 ttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcag 1009  Q
    |||||||||| || ||||||| ||||| ||||||||||| |||||||||||||| |||||||  |||||  || || | ||||| ||||| ||| |||||    
T  9817193 ttttcatgctgcagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggggtcagagtttcagatgagcaaggtatgtgtcag 9817094  T
Q  1010 gttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
    |||||       ||||||||||| |||||||| ||||| ||||  |||||||||||||||||  | || |||||||||||||| ||||||||||    
T  9817093 gttgcaaaagggtattttgagacattatttttggagagtaatatcactcgtgcaccggttgtagacattatagaaaaagttgtttctgatgatg 9817000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 910 - 1103
Target Start/End: Complemental strand, 10719118 - 10718925
Alignment:
Q  910 ttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcag 1009  Q
    |||||||||| || ||||||| ||||| ||||||||||| |||||||||||||| |||||||  |||||  || || | ||||| ||||| ||| |||||    
T  10719118 ttttcatgctgcagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggggtcagagtttcagatgagcaaggtatgtgtcag 10719019  T
Q  1010 gttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
    |||||       ||||||||||| |||||||| ||||| ||||  |||||||||||||||||  | || |||||||||||||| ||||||||||    
T  10719018 gttgcaaaagggtattttgagacattatttttggagagtaatatcactcgtgcaccggttgtagacattatagaaaaagttgtttctgatgatg 10718925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 17500802 - 17500880
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||  || ||||||||||||||||| |||||||    
T  17500802 gttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactct 17500880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 17552412 - 17552334
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||  || ||||||||||||||||| |||||||    
T  17552412 gttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactct 17552334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 49089129 - 49089053
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||| | | || |||||||||||||| ||||||    
T  49089129 ttttggaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcagaaattgttgtacatatatcactactc 49089053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 30391251 - 30391328
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||||||| ||| ||||||||| |||| ||||||||||||||||||||  || ||| ||||||||||||| ||||||    
T  30391251 gttttggaccaatgagaagagagtaaataaaagttgtcatcaaagttgtaccaaatgattgtacatatatcactactc 30391328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 23761172 - 23761251
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| |||| |||||||| |||| |||||||| ||||||||||||| |||||||| |||| ||||| | ||||||    
T  23761172 gttttggactaataggaagagagtaaataaaagttgttatcaaagttgttagatatggttatacaaatatcacaactctt 23761251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 24267613 - 24267543
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||  || |||| |||| |||||||||||||||||||||| ||||||||||||| |||||    
T  24267613 gttttggaccaatagaaaaagagtaaataaaagttgtcatcaaagttgttagatatggttgtacaaatatc 24267543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 27070635 - 27070557
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||||||||||  || ||| ||| ||||||||| |||||||    
T  27070635 gttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatgattgcacatatatcactactct 27070557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 27207678 - 27207756
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||||||||||  || ||| ||| ||||||||| |||||||    
T  27207678 gttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatgattgcacatatatcactactct 27207756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 31009606 - 31009536
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| |||| |||||||| |||| ||||||||||  |||||||||| ||||||||||||| |||||    
T  31009606 gttttggaccaataggaagagagtaaataaaagttgtcactaaagttgttagatatggttgtacaaatatc 31009536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 18067890 - 18067821
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||| || |||| |||||||| |||| |||||||||||||||||||||| |||| |||||||| |||||    
T  18067890 ttttgaaccaataggaagagagtaaataaaagttgtcatcaaagttgttagatatagttgtacaaatatc 18067821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 47644814 - 47644891
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||| |  || ||  ||||||||||||| ||||||    
T  47644814 gttttggaccaatgagaagagagcaaatgaaagttgtcatcaaagttataccaaataattgtacatatatcactactc 47644891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 709 - 757
Target Start/End: Complemental strand, 44416029 - 44415981
Alignment:
Q  709 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaa 757  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||    
T  44416029 aaaatctatttttttcaaacataaggagataagatatgaactagttaaa 44415981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 31436523 - 31436600
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    |||| ||| ||| ||||||||  |||||||||||||||||||| ||||  || ||||||||||||||||| ||||||||    
T  31436523 ttttagaccaatgagaagagataaaatgaaagttgtcatcaaa-ttgtatcaaatggttgtacatatatcactactctt 31436600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 44196179 - 44196110
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatat 255  Q
    ||||||||| ||||  ||||| | |||| |||||||||||||||||||||| |||| |||||||| ||||    
T  44196179 gttttggaccaatagaaagagcgtaaataaaagttgtcatcaaagttgttagatatagttgtacaaatat 44196110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 36186836 - 36186779
Alignment:
Q  210 aaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactcttaa 267  Q
    |||| |||||||||||||||||| |  || |||||||||||||||||  |||||||||    
T  36186836 aaataaaagttgtcatcaaagttataccaaatggttgtacatatatcattactcttaa 36186779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 30530365 - 30530286
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||| ||||||||    
T  30530365 gttttggaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 30530286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 52417636 - 52417715
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||| || || |||||| ||||||| ||||||||    
T  52417636 gttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgttccaaatagttgtatatatatcactactctt 52417715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 34002286 - 34002209
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||||  || || |||||||||||||| ||||||    
T  34002286 gttttggaccaataagaagagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatcactactc 34002209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 40139218 - 40139287
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatat 255  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||| ||| || |||||||||||||    
T  40139218 gttttggacaaatgagaagagagaaaatgaaagttgtcatcaaacttgtcacaaatagttgtacatatat 40139287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 33669789 - 33669710
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||| ||||||||  |||||| ||||||||||||||||||  || ||||||||||||||||| ||||||||    
T  33669789 gttttggaccaatgagaagagaaaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 33669710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 50884736 - 50884658
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    ||||||||| ||| |||||| || ||||||||||| |||||||||||||  || ||||||||||||||||| |||||||    
T  50884736 gttttggactaatgagaagatagcaaatgaaagttttcatcaaagttgtaccaaatggttgtacatatatcactactct 50884658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 8464478 - 8464401
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||||||   ||  |||||||||||||||| |||||||    
T  8464478 ttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttggcccaagtggttgtacatatatcactactct 8464401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 45470805 - 45470725
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctta 266  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||| || || || |||||| || |||| |||||||||    
T  45470805 gttttggaccaataagaagagagaaaatgaaagttgtgatcaaagtttttccaaatagttgtaaatttatcgctactctta 45470725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 4511743 - 4511664
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||| ||||||||  ||||||||||||||||| |||||||  || |||||||||||||||||  |||||||    
T  4511743 gttttggaccaatgagaagagaaaaaatgaaagttgtcatctaagttgtcccaaatggttgtacatatatcattactctt 4511664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 1724200 - 1724130
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| |||| |||||||| |||| |||||||  ||||||||||||| ||||||||||||| |||||    
T  1724200 gttttggaccaataggaagagagtaaataaaagttgcgatcaaagttgttagatatggttgtacaaatatc 1724130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 4154687 - 4154757
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||||||||||| |||| |||||| |||| |||||||||| ||||| ||||||| |||||    
T  4154687 gttttggaccaataagaagagagtaaataaaagttatcattaaagttgttagatatgtttgtacaaatatc 4154757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 5975642 - 5975712
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||  ||||||| |||| ||||||||||| |||||||||| ||||||||||||| |||||    
T  5975642 gttttggaccaatagaaagagagtaaataaaagttgtcattaaagttgttagatatggttgtacaaatatc 5975712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 38233378 - 38233448
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| |||| |||||||| |||| ||||||||||| ||| |||||| ||||||||||||| |||||    
T  38233378 gttttggaccaataggaagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatc 38233448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 51250247 - 51250187
Alignment:
Q  196 aataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||||||| |||| |||||||||||||||||| || || ||| |||||||||||||    
T  51250247 aataagaagagagaaaataaaagttgtcatcaaagttatttcaaatgattgtacatatatc 51250187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 52369077 - 52369001
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctact 262  Q
    ||||||||| ||| |||| |||| |||||||||||||||||||||||||   | || |||||||||||||| |||||    
T  52369077 gttttggaccaatgagaatagagcaaatgaaagttgtcatcaaagttgtactaaatagttgtacatatatcactact 52369001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 5315316 - 5315395
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    |||||| || |||||||| |||| |||||||||| ||||||||||||||   | ||||||||||||||| | ||||||||    
T  5315316 gttttgaaccaataagaaaagagaaaatgaaagtcgtcatcaaagttgtctaaaatggttgtacatatagcactactctt 5315395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 915 - 1103
Target Start/End: Original strand, 15229734 - 15229922
Alignment:
Q  915 atgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgc 1014  Q
    |||||||| |||| ||  |||| ||||||||||| |||||||||||||| |||||||  || || ||| || | ||||||||||| ||| |  |||||||    
T  15229734 atgcttcagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggagtccgagtttcagatgaacaaggtatgcgctaggttgc 15229833  T
Q  1015 nnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 1103  Q
           |||||||| || |||||||| ||||| || || |||||| || |||||||  | || |||||||||||| | |||| |||||    
T  15229834 taaagggtattttgaaacattatttttggagagtaacagcactcgtacatcggttgtagacattatagaaaaagttctttctgttgatg 15229922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 21154354 - 21154405
Alignment:
Q  212 atgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    |||||||||||||||||||||||  || ||||||||||||||||| ||||||    
T  21154354 atgaaagttgtcatcaaagttgtatcaaatggttgtacatatatcactactc 21154405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 24611973 - 24612028
Alignment:
Q  210 aaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||| | ||||||    
T  24611973 aaataaaagttgtcatcaaagttgttagatatggttgtacaaatatcacaactctt 24612028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 15059729 - 15059799
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||| ||||  || ||| |||||||| ||||    
T  15059729 gttttggacaaatgagaagagagaaaatgaaaattgtcatcaaaattgtcccaaatgattgtacatgtatc 15059799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 44950387 - 44950317
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||  |||| |||||||| |||| ||||||||||| ||| ||||||||||| |||||||| |||||    
T  44950387 gttttggatcaataggaagagagtaaataaaagttgtcattaaaattgttacatatagttgtacaaatatc 44950317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 52078539 - 52078596
Alignment:
Q  199 aagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    |||||||||| ||||||||||| ||||||||||||||  | || ||||||||||||||    
T  52078539 aagaagagagaaaatgaaagttatcatcaaagttgttcaaaatagttgtacatatatc 52078596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 709 - 761
Target Start/End: Original strand, 19070949 - 19071001
Alignment:
Q  709 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatc 761  Q
    |||||||||||  ||||||||||||||||||||| || | |||||||||||||    
T  19070949 aaaatctatttatttcaaacataaggaggtaagacatgagctagttaaaaatc 19071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 709 - 761
Target Start/End: Original strand, 19118839 - 19118891
Alignment:
Q  709 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatc 761  Q
    |||||||||||  ||||||||||||||||||||| || | |||||||||||||    
T  19118839 aaaatctatttatttcaaacataaggaggtaagacatgagctagttaaaaatc 19118891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 41558098 - 41558178
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctta 266  Q
    ||||| ||| |||||||||| || ||| |||||||||||  | |||||| ||| ||||||||||| ||||| |||||||||    
T  41558098 gtttttgaccaataagaagaaagaaaaggaaagttgtcacaatagttgtcacaaatggttgtacaaatatcactactctta 41558178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 49596346 - 49596425
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||| ||||  ||| |||| |||||| |||||||||||||  || |||||||||||||||||  |||||||    
T  49596346 gttttggaccaatgagaatggagcaaattaaagttatcatcaaagttgtaccaaatggttgtacatatatcattactctt 49596425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 50017389 - 50017310
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||| | ||||||| || |||||||| ||| |||||||||  || |||||||||||||||||  |||||||    
T  50017389 gttttggaccaatgaaaagagagaaattgaaagttatcaacaaagttgtctcaaatggttgtacatatatcagtactctt 50017310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 543 - 616
Target Start/End: Original strand, 41038752 - 41038825
Alignment:
Q  543 ccttttgttgacgaatctgaacatttctttcccgccaaatgacccagacatatgaaaatcaaattagatgaaga 616  Q
    |||||||||||  |||  || |||||||||| |||||||||||||| ||| |||||| |||||| | |||||||    
T  41038752 ccttttgttgaaaaattcgagcatttctttcacgccaaatgacccaaacacatgaaagtcaaatcatatgaaga 41038825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 156011 - 156090
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||||||||||  || ||||||||||||||||| ||||||||    
T  156011 gttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 156090  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 23920402 - 23920481
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||| |||| |||||||| |||| ||| ||||||| |||||||||||||||||||||||| ||||| | ||||||    
T  23920402 gttttggaccaataggaagagagtaaataaaaattgtcattaaagttgttacatatggttgtacaaatatcacaactctt 23920481  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 42104536 - 42104603
Alignment:
Q  201 gaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactcttaat 268  Q
    |||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||    
T  42104536 gaagagagtaaataaaagttgtcattaaagttgttacatatggttgtacaaatatcacaactcttaat 42104603  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 18713709 - 18713786
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactct 264  Q
    |||||||| ||| |||||||||  ||||||||||||||| ||| ||||| || ||||||||||||||||| |||||||    
T  18713709 ttttggaccaatgagaagagagagaatgaaagttgtcattaaaattgttccaaatggttgtacatatatcactactct 18713786  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 11233997 - 11233918
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||  ||| ||||||||| |||| ||||||||||||||||||||  || |||||||||||||||||  |||||||    
T  11233997 gttttggatcaatgagaagagagtaaataaaagttgtcatcaaagttgtaccaaatggttgtacatatatcagtactctt 11233918  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 42424336 - 42424415
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||  ||| ||||||||  |||||||||||||||||||||||||  || |||| |||||||||||| ||||||||    
T  42424336 gttttggagcaatgagaagagaataaatgaaagttgtcatcaaagttgtaccaaatggatgtacatatatcactactctt 42424415  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 22153970 - 22154048
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    |||||||| ||| | ||||||| |||||||||||||||| ||||||||  || ||||||||||| ||||| ||||||||    
T  22153970 ttttggaccaatgaaaagagagcaaatgaaagttgtcattaaagttgtaccaaatggttgtacaaatatcactactctt 22154048  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 47509113 - 47509037
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctact 262  Q
    ||||||||| |||||||| |||  |||| ||| ||||||||||||||||  || ||||||||||||||||| |||||    
T  47509113 gttttggaccaataagaaaagaacaaataaaaattgtcatcaaagttgtatcaaatggttgtacatatatcactact 47509037  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 35425638 - 35425559
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctt 265  Q
    ||||||||  ||| ||||||||| ||||||||||||||||||||| |||  || ||| || |||||||||| ||||||||    
T  35425638 gttttggatcaatgagaagagagcaaatgaaagttgtcatcaaagatgtaccaaatgattatacatatatcactactctt 35425559  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 37323774 - 37323841
Alignment:
Q  188 tttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatat 255  Q
    ||||||| ||||||||| ||| |||||||| ||||||||||||||||  || || |||||||||||||    
T  37323774 tttggaccaataagaagggagaaaatgaaaattgtcatcaaagttgtcccaaatagttgtacatatat 37323841  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 4208180 - 4208114
Alignment:
Q  200 agaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctta 266  Q
    |||||| || |||||||||||||||  ||| |||| ||| ||||||||||||||||| |||||||||    
T  4208180 agaagaaagaaaatgaaagttgtcaataaaattgtcacagatggttgtacatatatcactactctta 4208114  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 12094356 - 12094280
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctact 262  Q
    ||||| ||| ||||||||||||| ||||||||  ||||||||||||||| | | | ||||||||| ||||| |||||    
T  12094356 gttttagaccaataagaagagagcaaatgaaatgtgtcatcaaagttgtcatagacggttgtacaaatatcactact 12094280  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 709 - 760
Target Start/End: Original strand, 17229130 - 17229181
Alignment:
Q  709 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaat 760  Q
    |||||||||||| || ||||||||| |||||||| ||||||||| |||||||    
T  17229130 aaaatctattttttttaaacataagaaggtaagacataaactagataaaaat 17229181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 43176310 - 43176377
Alignment:
Q  196 aataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactc 263  Q
    ||||| ||||||| |||| |||||| |||||||||||||  || ||||||||| ||||||| ||||||    
T  43176310 aataaaaagagagcaaataaaagttatcatcaaagttgtatcaaatggttgtatatatatcactactc 43176377  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 31169512 - 31169450
Alignment:
Q  200 agaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctact 262  Q
    |||| |||| |||||||||||||||||||| |||| |||||| ||||||  ||||||| ||||    
T  31169512 agaatagagaaaatgaaagttgtcatcaaaattgtcacatatagttgtatttatatccttact 31169450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 53133914 - 53133844
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||||  ||||||| |  ||| |||||||||||||||||| ||| ||||||||||| |||||    
T  53133914 gttttggaccaatagaaagagagcacctgatagttgtcatcaaagttgtcacacatggttgtacaaatatc 53133844  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 55196486 - 55196441
Alignment:
Q  187 ttttggacaaataagaagagaggaaatgaaagttgtcatcaaagtt 232  Q
    |||||||| ||||| ||||||| ||||||||||| |||||||||||    
T  55196486 ttttggactaataaaaagagagaaaatgaaagttatcatcaaagtt 55196441  T

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Target: scaffold0057 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 21540 - 21470
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||||| ||| ||||||||| ||||||||||||| ||||||||||| ||| ||| |||||||||||||    
T  21540 gttttggaccaatgagaagagagaaaatgaaagttgttatcaaagttgtcacaaatgattgtacatatatc 21470  T

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Target: scaffold0194 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 29776 - 29728
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgt 234  Q
    ||||||||| ||| | ||||||| |||||||||||||||||||||||||    
T  29776 gttttggaccaatgaaaagagagaaaatgaaagttgtcatcaaagttgt 29728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 14515 - 14435
Alignment:
Q  186 gttttggacaaataagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatccctactctta 266  Q
    ||||||||| ||| ||||||||  |||| ||| |||||| |||||||||  || |||| |||||||||||| |||||||||    
T  14515 gttttggaccaatgagaagagaacaaattaaaattgtcaacaaagttgtaccaaatggatgtacatatatcactactctta 14435  T

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Target: scaffold0068 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 709 - 761
Target Start/End: Original strand, 58496 - 58548
Alignment:
Q  709 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatc 761  Q
    |||||||||||  ||||||||||||||||||||| || | |||||||||||||    
T  58496 aaaatctatttatttcaaacataaggaggtaagacatgagctagttaaaaatc 58548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 11759 - 11813
Alignment:
Q  202 aagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||| |||| ||||||||||| ||| |||||| ||||||||||||| |||||    
T  11759 aagagagtaaataaaagttgtcattaaaattgttagatatggttgtacaaatatc 11813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 4435 - 4489
Alignment:
Q  202 aagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatc 256  Q
    ||||||| |||| | |||||||||||||||||| ||  |||||||||||||||||    
T  4435 aagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatc 4489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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