View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_10 (Length: 544)
Name: NF5824_low_10
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 22 - 530
Target Start/End: Complemental strand, 36459094 - 36458586
Alignment:
| Q |
22 |
gatgcttcaactaaacctattaagattcgtcaggtgtgggctgaaaatctgaagcgtgaatttgatcttataagaaatttcgttcacatgtttccctatg |
121 |
Q |
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| T |
36459094 |
gatgcttcaaataaacctattaagattcgtcaggtgtgggctgaaaatctggagcgtgaatttgatcttataagagatttcgttcacatgtttccctatg |
36458995 |
T |
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| Q |
122 |
tatcaatggataccgagtttcctggtgtcgtcgttgcacctaactttgatcccaatataccgtatcacctccgccatatggatccatcagaacagtacag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36458994 |
tatcaatggataccgagtttcctggtgtcgtcgttgcacctaactttgatcccaatataccgtatcacctccgccatatggatccatcagaacagtacag |
36458895 |
T |
|
| Q |
222 |
tttcttgaaggctaacgtggataatctcaagttgattcaactaggtcttactctcactgatgcaaatggtaacctacctggagatcatgcatacagctat |
321 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36458894 |
tttcttgaaggctaacgtggataatctcaacttgattcaactaggtcttactctcactgatgcaaatggtaacctacctggagatgttgcatacagctat |
36458795 |
T |
|
| Q |
322 |
atttgggaatttaatttcaaagattttgacgtggagcgtgatcttcaaaatccagactctatcgaattgcttcgtcgtcaaggcgttgattttaaacgta |
421 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
36458794 |
atttgggaatttaatttcaaagattttgacgtggaccgtgatcttcaaaatccagactctatcgaattgcttcgtcgtcaaggcatcgattttaaacgta |
36458695 |
T |
|
| Q |
422 |
atttaatttacggtgtcgattctctagaattttctaaattattcaggctgaagtctggactagtcaacagtggagtttcttgggttacatttcacagctc |
521 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36458694 |
atttaatttacggtgtcgattctctagaatttgctaaattattcagactgaagtctggactagtcaacagtggagtttcttgggttacatttcacagctc |
36458595 |
T |
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| Q |
522 |
atatgattt |
530 |
Q |
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| T |
36458594 |
atatgattt |
36458586 |
T |
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