View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_11 (Length: 476)
Name: NF5824_low_11
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_11 |
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| [»] chr8 (9 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 33041372 - 33040915
Alignment:
| Q |
19 |
gcatctggattggtgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
33041372 |
gcatctggattggtgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaactcaaggggataaaaaatggaataggta |
33041273 |
T |
|
| Q |
119 |
gcatatggagcaagcatatgctctgtcggtcaaattcccacgctgctttggatgtaactccaattgaacctattcaacagggacaatgggcaagtctacc |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041272 |
gcatatggagcaagcatatgttctgtcggtcaaattcccacgttgctctggatgtaactccaattgaacctattcaacagggacaatgggcaagtctacc |
33041173 |
T |
|
| Q |
219 |
acctgaattgcttttggacataatctgaagggttgaaaagagtgagacatcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatca |
318 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041172 |
acctgaattgcttttggacataatccgaagggttgaaaagagtgagacattttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatca |
33041073 |
T |
|
| Q |
319 |
tggaggtccgccatgttagagatcatcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccact |
418 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041072 |
tggaggtccgccacattagagatcgtcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccact |
33040973 |
T |
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| Q |
419 |
ttctggtctaatccaaattattcttttcggtcatgttttttatgttctctttccttta |
476 |
Q |
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| T |
33040972 |
ttctggtctaatccgaattattcttttctgtcatgttttttatgttctctttccttta |
33040915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 129 - 476
Target Start/End: Complemental strand, 33020128 - 33019783
Alignment:
| Q |
129 |
caagcatatgctctgtcggtcaaattcccacgctgctttggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattg |
228 |
Q |
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|||||||| |||||||||| |||| ||||| | ||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
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| T |
33020128 |
caagcataggctctgtcggacaaagtcccatgttgcactggatgtaactccaattgaacctgttcaacagggacagtgggcatatctaccacctgaattg |
33020029 |
T |
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| Q |
229 |
cttttggacataatctgaagggttgaaaagagtgagacatcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccg |
328 |
Q |
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|||||||| |||||| | ||||||||| |||||| ||||||||||||||| ||||| ||||| ||| ||||||||| ||||||||||| ||||||||| |
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| T |
33020028 |
cttttggatataatccgtagggttgaagagagtgcgacatcttggcctgcccgtgccattgttgtctgttgtgcttcggtatgtaaatcgtggaggtcca |
33019929 |
T |
|
| Q |
329 |
ccatgttagagatcatcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtcta |
428 |
Q |
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|| ||||||||| ||||||||||||| |||||||||| | | ||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||| |
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| T |
33019928 |
tcacgttagagattgtcaagactcctcagcaatgtggaatgcttacatttcctatttcattgaagcaggtaatgaatt-cttctcccactttctggtctg |
33019830 |
T |
|
| Q |
429 |
atccaaattattcttttcggtcatgttttttatgttctctttccttta |
476 |
Q |
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|| |||||||||| | | | ||| |||||||||||||||||||||||| |
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| T |
33019829 |
atacaaattattcgtattgctca-gttttttatgttctctttccttta |
33019783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 142 - 406
Target Start/End: Original strand, 32828684 - 32828948
Alignment:
| Q |
142 |
tgtcggtcaaattcccacgctgctttggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataa |
241 |
Q |
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||||||||||| || || | |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
32828684 |
tgtcggtcaaagtcgcatgttgctccggatgtaactccaattgaacctattcaacaaggacaatgggcgagtctacctcctgaattgcttttggacataa |
32828783 |
T |
|
| Q |
242 |
tctgaagggttgaaaagagtgagacatcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagat |
341 |
Q |
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|| | ||||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||| |
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| T |
32828784 |
tccgtagggttgaagagagtgagacatcttggcctgctcgtgctgttgttgttttttgtgcttcggtatgtaaatcatggaggtccgttactaaggagat |
32828883 |
T |
|
| Q |
342 |
catcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaatt |
406 |
Q |
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||||||||||| || ||||| |||||||||||||||||||||||| |||| || ||||| |||| |
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| T |
32828884 |
tatcaagactccccagcaatgcggaaggatcacatttcctatttcattgaaacaagtaataaatt |
32828948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 177 - 476
Target Start/End: Complemental strand, 33026128 - 33025826
Alignment:
| Q |
177 |
tccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatctgaagggttgaaaagagtgagacatcttggcct |
276 |
Q |
| |
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||||||| ||||| ||| | ||||| |||||| || |||||||| |||||||||||||||||||||| | | ||||||| | |||||||||||||||||| |
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| T |
33026128 |
tccaattaaacctcttccaaagggagaatgggaaactctaccacgtgaattgcttttggacataatccgtaaggttgaagaaagtgagacatcttggcct |
33026029 |
T |
|
| Q |
277 |
gcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagatcatcaagactcctcaacaatgtggaaggatcacat |
376 |
Q |
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||||||||||||||| || | ||||||||||||||||||||||||||||||| || ||||||| |||| |||| ||| ||||||||||||||||||| |
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| T |
33026028 |
gcacgtgctgttgttgtcgtctgtgcttcagtatgtaaatcatggaggtccgtcacaaaagagatcgtcaaaactcttcagcaatgtggaaggatcacat |
33025929 |
T |
|
| Q |
377 |
ttcctatttcagtgaagcaggtaatcaatta---tttcacccactttctggtctaatccaaattattcttttcggtcatgttttttatgttctctttcct |
473 |
Q |
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||||||||||| ||| ||||| ||| |||| |||||||||||||||||||||| ||||| |||||| || || ||||||||||||||||||||| |
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| T |
33025928 |
ttcctatttcattgatgcaggcaatacattaattcttcacccactttctggtctaattcaaatgattcttatccctcgagttttttatgttctctttcct |
33025829 |
T |
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| Q |
474 |
tta |
476 |
Q |
| |
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||| |
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| T |
33025828 |
tta |
33025826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 33030452 - 33030331
Alignment:
| Q |
352 |
cctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtctaatccaaattattcttttcggtca |
451 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||| ||| |
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| T |
33030452 |
cctcagcaatgtgaaaggatcacatttcctatttcagtgaagcaggtaataaatta-ttcacccactttctggtctaatccaatttatcattttccctca |
33030354 |
T |
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| Q |
452 |
tgttttttatgttctctttcctt |
474 |
Q |
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| T |
33030353 |
tattttttatgttctatttcctt |
33030331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 33030563 - 33030517
Alignment:
| Q |
169 |
gatgtaactccaattgaacctattcaacagggacaatgggcaagtct |
215 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
33030563 |
gatgtaactccagttgaacctattcaacagggacaatgggaaagtct |
33030517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 33015867 - 33015808
Alignment:
| Q |
19 |
gcatctggattggtgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagc |
78 |
Q |
| |
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|||| ||||||||||||||||| |||||| ||||||| |||||||||| ||| ||||||| |
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| T |
33015867 |
gcatttggattggtgcagttttgtgttgcgacagagtttggaaacatggcattgaaaagc |
33015808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 32828584 - 32828651
Alignment:
| Q |
57 |
tggaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggtagcatat |
124 |
Q |
| |
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|||||||||||||| ||||| ||| |||| || | |||||||| |||||||||||||||||||||| |
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| T |
32828584 |
tggaaacatgtcattcaaaagtatagtccgcgaactcaaggggatgaaaaatggaataggtagcatat |
32828651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 33020243 - 33020145
Alignment:
| Q |
26 |
gattggtgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggtagcatat |
124 |
Q |
| |
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|||||| |||||||| |||||| || ||||||||| |||||||| ||||| | ||| | ||||| | ||||| || |||||| || |||||||||||| |
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| T |
33020243 |
gattggagcagttttgtgttgcgacgcagtgtggaagcatgtcattgaaaatcatagtctgcaaactcaagggcatgaaaaatcgactaggtagcatat |
33020145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 324
Target Start/End: Complemental strand, 7880317 - 7880175
Alignment:
| Q |
182 |
ttgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatctgaagggttgaaaagagtgagacatcttggcctgcacg |
281 |
Q |
| |
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||||||||||||| |||||||||||||| | | ||||| |||||||||| | || ||||| ||||||| ||| ||| ||||| |||||||||||||| |
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| T |
7880317 |
ttgaacctattcagcagggacaatgggctaatataccatctgaattgctacttgatataattcgaagggtagaagagaccgagacttcttggcctgcacg |
7880218 |
T |
|
| Q |
282 |
tgctgttgttatcttttgtgcttcagtatgtaaatcatggagg |
324 |
Q |
| |
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||||||||| | | ||||||||| || ||||||||||||||| |
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| T |
7880217 |
tgctgttgtcgtttcttgtgcttctgtgtgtaaatcatggagg |
7880175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 12494 - 12550
Alignment:
| Q |
268 |
tcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggagg |
324 |
Q |
| |
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||||||||||||||| ||||||| || | ||||||||| || ||||||||||||||| |
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| T |
12494 |
tcttggcctgcacgtactgttgtcatttcttgtgcttctgtgtgtaaatcatggagg |
12550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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