View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_12 (Length: 472)
Name: NF5824_low_12
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 25550762 - 25550317
Alignment:
| Q |
18 |
ttgtattatgaaattataatataaattacattaacacagattttttgtttctaattagttatagttggctgaagttttgtacctgagtgggttcattact |
117 |
Q |
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| T |
25550762 |
ttgtattatgaaatgataatataaattacatcaacacagattttttgtttctaattatttatagttggctgaagttttgtacctgagtgggttcattact |
25550663 |
T |
|
| Q |
118 |
tacccaatgactggaacatatatctttccgccatcgactaatctgaaggtggatttcaatttatgacattttatggctatatgattcgaactaatgtctg |
217 |
Q |
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| T |
25550662 |
tacccaatgactggaacatatatctttccgccatcgactaatctgaaggtggatttcaatttatgacattttatggctatacgattcgaactaatgtatg |
25550563 |
T |
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| Q |
218 |
ttaatgttattcgttattgccctttctgatttggccatatagaaatttattttgaatgtcagaactgataaccatgtctaaaagtatgttatgcactact |
317 |
Q |
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| T |
25550562 |
ttaatgttattcgttattgccctttttgatttggccatatagaaatttattttgaatgtcagaactgataaccatgtctaaaagtatgttatgcactact |
25550463 |
T |
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| Q |
318 |
acttcagcctaaagtaatattgagattaatgttttttcaagttatatttgcctactataaatttttggtaatattagagaacttttgattgcgtcccttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |
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| T |
25550462 |
acttcagcctaaagtaatattgagattaatgttttttcaagttatatttgcctactataagttcctggtaatattagagaacttttgattgtgtcccttc |
25550363 |
T |
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| Q |
418 |
cttagtagattggattaatttaaaaaattgcgtgaatgagaataat |
463 |
Q |
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| T |
25550362 |
cttagtagattggattaatttaaaaaattgcgtgaatgagaataat |
25550317 |
T |
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