View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5824_low_14 (Length: 465)

Name: NF5824_low_14
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5824_low_14
NF5824_low_14
[»] chr6 (1 HSPs)
chr6 (82-150)||(7600006-7600074)
[»] chr5 (2 HSPs)
chr5 (82-150)||(19611252-19611320)
chr5 (330-377)||(31778487-31778535)
[»] chr4 (3 HSPs)
chr4 (82-150)||(28462449-28462517)
chr4 (11-40)||(46632298-46632327)
chr4 (82-150)||(54188534-54188602)
[»] chr3 (1 HSPs)
chr3 (82-150)||(23361691-23361759)
[»] chr2 (1 HSPs)
chr2 (82-150)||(45402104-45402172)
[»] chr7 (3 HSPs)
chr7 (370-450)||(25630332-25630414)
chr7 (82-150)||(3367622-3367690)
chr7 (98-150)||(7710919-7710971)
[»] chr8 (1 HSPs)
chr8 (95-143)||(23241019-23241067)


Alignment Details
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 7600074 - 7600006
Alignment:
Q  82 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 150  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  7600074 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 7600006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 19611320 - 19611252
Alignment:
Q  82 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 150  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  19611320 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 19611252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 31778535 - 31778487
Alignment:
Q  330 ttcagaaatactgcaaaagcttaaatccaga-aaaatctagtgccataa 377  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  31778535 ttcagaaatactgcaaaagcttaaatccagaaaaaatctagtgacataa 31778487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 28462449 - 28462517
Alignment:
Q  82 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 150  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  28462449 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 28462517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 46632298 - 46632327
Alignment:
Q  11 caaaggtccaaaacactatatcacatataa 40  Q
    ||||||||||||||||||||||||||||||    
T  46632298 caaaggtccaaaacactatatcacatataa 46632327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 54188534 - 54188602
Alignment:
Q  82 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 150  Q
    |||||||||||  |||||||||||||||| ||||| ||  ||| ||| ||| ||| |||||||||||||    
T  54188534 attgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataatacct 54188602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 23361759 - 23361691
Alignment:
Q  82 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 150  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  23361759 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 23361691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 45402172 - 45402104
Alignment:
Q  82 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 150  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  45402172 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 45402104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 25630414 - 25630332
Alignment:
Q  370 tgccataactcact--ataatcccttgcaataacagtttggcaaatagacgccgactacaaacataacgtttcggtttttatt 450  Q
    ||||||||||||||  |||||| | ||||| |||||||||| ||||||| |||||||||||| ||||||||| || |||||||    
T  25630414 tgccataactcactctataatctcatgcaacaacagtttggaaaatagaagccgactacaaatataacgtttaggcttttatt 25630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 3367622 - 3367690
Alignment:
Q  82 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 150  Q
    |||||||||||  |||||||||||||||| ||||| || |||| ||| ||| ||| |||||||||||||    
T  3367622 attgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataatacct 3367690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 7710971 - 7710919
Alignment:
Q  98 aaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 150  Q
    ||||||||||||| ||||| || |||| |||||||||||||||||| ||||||    
T  7710971 aaatttcattgagtcaaattatcaaacacctcatatgcaacacaatcatacct 7710919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 23241067 - 23241019
Alignment:
Q  95 gtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaat 143  Q
    |||||||||||||||| ||||| || |||| | ||||||||||||||||    
T  23241067 gtcaaatttcattgagtcaaattatcaaacacttcatatgcaacacaat 23241019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University