View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_15 (Length: 454)
Name: NF5824_low_15
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 41 - 436
Target Start/End: Complemental strand, 199939 - 199544
Alignment:
| Q |
41 |
tcttcttcttatctaccgtacccaacaccaacaacacttcctccaattctgggcatcgacgcttacctctgtattgtgcagtgttatctattttgttcgt |
140 |
Q |
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| T |
199939 |
tcttcttcttctctaccgtacccaacaccaacaacacttcctccaattctgggcatcgacgcttacctttgtattgtgcagtgttatctattttgttcgt |
199840 |
T |
|
| Q |
141 |
gatttgggaaaacaaattggaagatgaaattgaaagctgaaactgaattgatcgaaaagcaaaagaacaacaacgctaatgattgatcgaaagtaacaca |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
199839 |
gatttgggaaaacaaattggaagatgaaattgaaagctgaaactgaattgatcgaaaagcaaaagaacaacaatgctaatgattgatcgaaagtaacaca |
199740 |
T |
|
| Q |
241 |
gctagaaaataagattcacacctcctaaccctcaaagctctggaaattttgggtcgtgaaatggaaagagatttgaaacaagaaacacaaatcagaaata |
340 |
Q |
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| T |
199739 |
gctagaaaataagattcacacctcctaaccctcaaagctctggaaattttgggtcgcgaaatggaaagagatttgaaacaagaaacacaaatcagaaata |
199640 |
T |
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| Q |
341 |
agaaaacaacaaacacgtgtttttgtaccggaagagcgatggcggtgcgctggtagtggtgtcggcagaaactgaggctttgtacagatcctctgt |
436 |
Q |
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| T |
199639 |
agaaaacaacaaacacgtgtttttgtaccggaagagcgatggcggtgcgctggtagtggcgtcggcagaaactgaggctttgtacagatcctctgt |
199544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 23485543 - 23485479
Alignment:
| Q |
230 |
aaagtaacacagctagaaaataagattcacacctcctaaccctcaaagctctggaaattttgggt |
294 |
Q |
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| T |
23485543 |
aaagtaacacaggtgggaaacaagattcacacctcctaaccctcaaagctctggaaattttgggt |
23485479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 35712959 - 35712895
Alignment:
| Q |
230 |
aaagtaacacagctagaaaataagattcacacctcctaaccctcaaagctctggaaattttgggt |
294 |
Q |
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| T |
35712959 |
aaagtaacacaggtgggaaacaagattcacacctcctaaccctcaaagctctggaaattttgggt |
35712895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 1079255 - 1079289
Alignment:
| Q |
157 |
ttggaagatgaaattgaaagctgaaactgaattga |
191 |
Q |
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| T |
1079255 |
ttggaagatgaaatcgaaagctgaaactgaattga |
1079289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 13385235 - 13385299
Alignment:
| Q |
230 |
aaagtaacacagctagaaaataagattcacacctcctaaccctcaaagctctggaaattttgggt |
294 |
Q |
| |
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|||||||||||| | | ||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13385235 |
aaagtaacacaggtgggaaacaagattcacacctcctaaccctcaaagctctggaaagtttgggt |
13385299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 24141851 - 24141817
Alignment:
| Q |
157 |
ttggaagatgaaattgaaagctgaaactgaattga |
191 |
Q |
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| T |
24141851 |
ttggaagatgaaatcgaaagctgaaactgaattga |
24141817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 33608584 - 33608531
Alignment:
| Q |
323 |
aaacacaaatcagaaataagaaaacaacaaacacgtgtttttgtaccggaagag |
376 |
Q |
| |
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|||||||| |||||| |||||||||| | ||||||||||||||| |||||||| |
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| T |
33608584 |
aaacacaacccagaaacaagaaaacaatacacacgtgtttttgtagcggaagag |
33608531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 32063012 - 32062979
Alignment:
| Q |
157 |
ttggaagatgaaattgaaagctgaaactgaattg |
190 |
Q |
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| T |
32063012 |
ttggaagatgaaatggaaagctgaaactgaattg |
32062979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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