View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_18 (Length: 437)
Name: NF5824_low_18
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 42703535 - 42703942
Alignment:
| Q |
20 |
accagtaacacggtgcctcaaccaagaagaaaacccatctaacctaaactctttgtaccctctatcaggaacaacatagcttccatcaggtctagtaaca |
119 |
Q |
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| T |
42703535 |
accagtaacacggtgcctcaaccaagaagaaaacccatctaacctaaactctttgtaccctctatcaggaacaacatagcttccatcaggtctagtaaca |
42703634 |
T |
|
| Q |
120 |
acgaaggcgaaaacgaggatgatgagtagaagagcgattaaaagtgccatagcaaaaaggtaaagtgctaagagaccttctttgttataataagcaccta |
219 |
Q |
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| T |
42703635 |
acgaaggcgaaaacgaggatgatgagtagaagagcgattaaaagtgccatagcaaaaaggtaaagtgctaagagaccttctttgttataataagcaccta |
42703734 |
T |
|
| Q |
220 |
caaaaccagttaaagcaacgaggaagacaaggatgccgactatgacaatgggccatcggaaattggctatgcattcgttgtctggttttgaagctagcca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42703735 |
taaaaccagttaaagcaacgaggaagacaaggatgccgattatgacaatgggccatcggaaattggctatgcattcgttgtctggttttgaagctagcca |
42703834 |
T |
|
| Q |
320 |
aattcctgaagctatgattggtattgaggctaatattgctatgatgtttagaactgcggttatgttgttgcttacacccatcacaggtatcagttaccac |
419 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42703835 |
aattccggaagctatgattggtattgaggctaatattgctatgatgtttagaactgcggttatattgttgcttacacccatcacaggtatcagttaccac |
42703934 |
T |
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| Q |
420 |
tgcctttg |
427 |
Q |
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|||||||| |
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| T |
42703935 |
tgcctttg |
42703942 |
T |
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