View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_2 (Length: 811)
Name: NF5824_low_2
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 609; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 50 - 797
Target Start/End: Original strand, 12811757 - 12812491
Alignment:
| Q |
50 |
aaaattaaacaatgtcacactaaaacgatgaacgaaacaactcaacacttaaacaacaaaattacagagaatacaaatgaaagaggaaatctacatggaa |
149 |
Q |
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| T |
12811757 |
aaaattaaacaatgtcgtactaaaatgataaacgaaacaactcaacacttagacaacaaaa---cagagaatacaaatgaaagaggaaatctacatggaa |
12811853 |
T |
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| Q |
150 |
actacttatttagataaaagatatacatatgggtgattcaaagaaaaaatggtcccaaacaaactctctcaagtgatgaggatgaatgaacaaaaatttc |
249 |
Q |
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| T |
12811854 |
actacttatttagataaaagatatacatatgggtgattcaaagaaaaaatggccccaaacaaactctctcaagtgatgaggatgaatgaacaaaaatttc |
12811953 |
T |
|
| Q |
250 |
aagagagagacagtggaaatccaacaattagatggggaaaagaagcctagttagcacacttttttacaagatgtagctacaacttcaaataa--taatat |
347 |
Q |
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| T |
12811954 |
aagagagagacagtggaaatccaacaattagatggggaaaagaagcctagtaagcacacttttttacaagatgtagctaccacttcaaataaaataatat |
12812053 |
T |
|
| Q |
348 |
gataataactaactttataaattgcatttacaattgcctagctaaaagactattgaatacaacaagctcacagcttttcacttgccatttgtttataatg |
447 |
Q |
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| T |
12812054 |
gataataactaactttataaattgcatttacaattgcctagctaaaagactattgaatacaacaagctcacagcttttcacttgccatttgtttataatt |
12812153 |
T |
|
| Q |
448 |
tgcaaattatggacaatgatcaataaaagaaaaatcatgagagccaaacaagacatagatatcaatacaatatatacaccaaataagacaaacccacaat |
547 |
Q |
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| T |
12812154 |
tgcaaattatggacaatgatcaataaaagaaaaatcatgaaagccaaacaagacatagatatcaatacaatatatacatcaaataagacaaacccaaaat |
12812253 |
T |
|
| Q |
548 |
tattactaaacaacctatgtcaaagtttggtgaattgatttaggcaatttggtaacaatggagactgtaattgcacgcatatttttcacatattgattac |
647 |
Q |
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| T |
12812254 |
tattactaaacaacctctgtcaaagtttggtgaattgatttaggcaatttggtaacaatggagactgtaattgcacacatatttttcacatattgattac |
12812353 |
T |
|
| Q |
648 |
tatctccaagtggcgaaatagctgaactagtggtgccattgcatttcttctcacaagaatcagccaa--atttccagcagtggttgcactttgcttgaca |
745 |
Q |
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| T |
12812354 |
tatctccaagtggcgaaata--------------gccattgcatttcttctcacaagaatcagccaattatttccagcagtggttgcactttgcttgaca |
12812439 |
T |
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| Q |
746 |
ccattataatcacctttgtctacacatttctgagcttgtggcacaagttctt |
797 |
Q |
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| T |
12812440 |
ccattataatcacttttgtctacacatttctgagcttgtggcacaagttctt |
12812491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 532 - 797
Target Start/End: Original strand, 12838120 - 12838388
Alignment:
| Q |
532 |
aagacaaacccacaattattactaaacaacctatgtcaaagtttggtgaattgatttaggcaatttggtaacaatggagactgtaattgcacgcatattt |
631 |
Q |
| |
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| T |
12838120 |
aagacaataccacaattagtactaaaaaatttatggtaaaatttggtgagttgattgaggaaattgggtagcaatggagactgtaattgcacacatattt |
12838219 |
T |
|
| Q |
632 |
ttcacatattgattactatctccaagtggcgaaata---gctgaactagtggtgccattgcatttcttctcacaagaatcagccaaatttccagcagtgg |
728 |
Q |
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| T |
12838220 |
ttcacatattgattactatccccaagttgcgaaagaacagctgaactagtggtgccattgcatttcttcccacaagtatcagccaaatttccagcagtgg |
12838319 |
T |
|
| Q |
729 |
ttgcactttgcttgacaccattataatcacctttgtctacacatttctgagcttgtggcacaagttctt |
797 |
Q |
| |
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| T |
12838320 |
ttgcactttgtttgacaccattataatcacttttgtctacacatttctgagcttgtggcacaagttctt |
12838388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 603 - 797
Target Start/End: Original strand, 12831364 - 12831561
Alignment:
| Q |
603 |
caatggagactgtaattgcacgcatatttttcacatattgattactatctccaagtggcgaaata---gctgaactagtggtgccattgcatttcttctc |
699 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| | |||||||||||||||||||||||||||||| | |
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| T |
12831364 |
caatggagactgtaattgcacacatatttttcacatattgattactatccccaagttgcgaaagaacagctgaactagtggtgccattgcatttcttccc |
12831463 |
T |
|
| Q |
700 |
acaagaatcagccaaatttccagcagtggttgcactttgcttgacaccattataatcacctttgtctacacatttctgagcttgtggcacaagttctt |
797 |
Q |
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| T |
12831464 |
acaagtatcagccaaatttccagcagtggttgcactttgtttgacaccattataatcacttttgtctacacatttctgagcttgtggcacaagttctt |
12831561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 322 - 464
Target Start/End: Original strand, 12830851 - 12830992
Alignment:
| Q |
322 |
gtagctacaacttcaaataataatatgataataactaactttataaattgcatttacaattgcctagcta-aaagactattgaatacaacaagctcacag |
420 |
Q |
| |
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|||||| | |||||| || || |||||||||||| ||| |||| ||||||||||||||||| |||||| ||| |||||| ||||||||||||| || |
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| T |
12830851 |
gtagcttctacttcacatcattatatgataataatacactctatatattgcatttacaattgcttagctacaaaaactatt--atacaacaagctcgtag |
12830948 |
T |
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| Q |
421 |
cttttcacttgccatttgtttataatgtgcaaattatggacaat |
464 |
Q |
| |
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| T |
12830949 |
ctttttactgcccatttgtttataatgtacaaattatggacaat |
12830992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 451 - 548
Target Start/End: Original strand, 12837936 - 12838036
Alignment:
| Q |
451 |
aaattatggacaatgatcaataaaagaaaa---atcatgagagccaaacaagacatagatatcaatacaatatatacaccaaataagacaaacccacaat |
547 |
Q |
| |
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|||||||||||||||||||| | ||||||| ||||||| ||||| | |||||||| |||||||||| |||||||||| |||||||||||| ||| ||| |
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| T |
12837936 |
aaattatggacaatgatcaacataagaaaaaaaatcatgacagccataaaagacatatatatcaatactatatatacacaaaataagacaaatccaaaat |
12838035 |
T |
|
| Q |
548 |
t |
548 |
Q |
| |
|
| |
|
|
| T |
12838036 |
t |
12838036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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