View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_22 (Length: 383)
Name: NF5824_low_22
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 7723194 - 7722848
Alignment:
| Q |
9 |
tgagatgaacgatgcatcattctttgtgaaaaagagtaatggaaaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagtgaattg |
108 |
Q |
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| T |
7723194 |
tgagatgaacgatgcatcattctttgtgaaaaagagtaatggaaaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattg |
7723105 |
T |
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| Q |
109 |
ttgtcttgtagtgtttgaagataataaaatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaat |
208 |
Q |
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| T |
7723104 |
ttgtcttgtagtgtttgaagataataaaatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaat |
7723005 |
T |
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| Q |
209 |
acaaaatatatatagtaaaggagataaaattatagagcataagagagagagggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtg |
308 |
Q |
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| T |
7723004 |
acaaaatatatatagtaaaggagataaaattataaagcataagagagagagggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtg |
7722905 |
T |
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| Q |
309 |
taatgtaagcaagtgtttgagtttctattatatctctgcagaattactactgtttat |
365 |
Q |
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| T |
7722904 |
taatgtaagcaagtgtttgagtttctattatatctctgcagaattactactgtttat |
7722848 |
T |
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