View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_23 (Length: 379)
Name: NF5824_low_23
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 31023539 - 31023900
Alignment:
| Q |
1 |
taatgtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttcacgtgttgcattaaaaattatgccatat |
100 |
Q |
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| T |
31023539 |
taatgtaaatgcaagaaaatttattaattttgatgagatcatcaaagataaagattctaggagtggtggttcatgtgttgcattaaaaattatgccatat |
31023638 |
T |
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| Q |
101 |
gaggagcccaaatcaaaacttagcgggtttaaagagaatgaca--gtttgcaagactttgaagtgagtcctaactcacaaactagagtgtgagataaatt |
198 |
Q |
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| T |
31023639 |
gaggagcccaaatcaaaacttagcgggtttaaagagaatgacacagtttgcaagactttgaagtgagtcctaactcacaaactagagtgtgagataaatt |
31023738 |
T |
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| Q |
199 |
aggaggtaaaattcctcggtttgaacatgattttaggcatgtaaaaaaggatcttaggcacagaggaaatagtaattccattgtcacaatcctggttaaa |
298 |
Q |
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| T |
31023739 |
aggaggtaaaattcctcggtttgaacatgattttaggcatgtaaaaaaggatcttaggcatagaggaaatagtaattccattgtcactatcctggttaaa |
31023838 |
T |
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| Q |
299 |
atgttttctcggtcaaagtagttaccacgttccctaaagaacaaattactttacgggctcta |
360 |
Q |
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| T |
31023839 |
atgttttctcggtcaaagtagttaccatgttccctaaggaacagattactttacgggctcta |
31023900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 35213886 - 35213972
Alignment:
| Q |
5 |
gtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttcacgtgttgcattaaaaatt |
91 |
Q |
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| T |
35213886 |
gtaaatgcaaggaaatttataaatattgatgaggtcattttagataaagattctaggagtggtgtttcaaatgttgcataaaaaatt |
35213972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 20402473 - 20402539
Alignment:
| Q |
17 |
aaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttcacgtgttgcat |
83 |
Q |
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| T |
20402473 |
aaatttattaatattggtgaggtcattatacataaagattctaggactggtggttcacgtgttgcat |
20402539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 43396625 - 43396706
Alignment:
| Q |
5 |
gtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttcacgtgttgcattaaaa |
88 |
Q |
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| T |
43396625 |
gtaaatgcaggtaaatttattaatattgatgaggtcat--tagataaatattctaggaatggtgattaacgtgttgcattaaaa |
43396706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 48038513 - 48038581
Alignment:
| Q |
5 |
gtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttca |
73 |
Q |
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|||||| |||| ||| |||||||| ||||||||||||| | | ||||||||| | ||||||||||||| |
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| T |
48038513 |
gtaaatacaagtaaacttattaatgttgatgaggtcattatatataaagattttatgagtggtggttca |
48038581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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