View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_24 (Length: 377)
Name: NF5824_low_24
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 33071204 - 33071559
Alignment:
| Q |
1 |
taatttgtttttcttttggttggtcgttgagttgattctcttttgagaatggtgaatactacttgcacttcatcatattcttaagaacctcttctgccta |
100 |
Q |
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| T |
33071204 |
taatttgtttttcttttggttggtcgttgagttgattctcttttgagaatggtgaatactacttgcacttcatcatattcttaagaacctcttctgccta |
33071303 |
T |
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| Q |
101 |
tctattctttttaggagtaataagtttgctattaaaagtaaaattacgagtctcacatctttttactagcaagttaaaatgaacacaaactttnnnnnnn |
200 |
Q |
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| T |
33071304 |
tctcttcttttt---agtaataagtttgctattaaaagtaaatttacgagtctcacatatttttactagcaagttaaaatgaacacaaactttaaaaatg |
33071400 |
T |
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| Q |
201 |
nnnnnnnnnnntatttttcacaaagtaactaatcctaaattgcttgaatttcgtatatatatgaccaattgaccaacaataatagtgtaagatgattcaa |
300 |
Q |
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| T |
33071401 |
aaaataaaaaatatttttcacaaagtaactaatcctaaattgcttgaatttcgtatatatatgaccaattgaccatcaataatagtgtaagatgattcaa |
33071500 |
T |
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| Q |
301 |
tagtggactgtttttatctgtctttgtaatatgttaagtttgtcacaagaattagaaac |
359 |
Q |
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| T |
33071501 |
tagtggactgtttttatctgtctttgtaatatgttaagtttgtcacaagaattagaaac |
33071559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 29939056 - 29939092
Alignment:
| Q |
151 |
tctcacatctttttactagcaagttaaaatgaacaca |
187 |
Q |
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| T |
29939056 |
tctcacatctttttattagcaagttaaattgaacaca |
29939092 |
T |
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