View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_26 (Length: 357)
Name: NF5824_low_26
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 49 - 286
Target Start/End: Original strand, 14542733 - 14542970
Alignment:
| Q |
49 |
cattttcaatagctatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttatcatgggatgtaat |
148 |
Q |
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| T |
14542733 |
cattttcaatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaat |
14542832 |
T |
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| Q |
149 |
tatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctttgatgcacaacaatcattcataagc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
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| T |
14542833 |
tatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagc |
14542932 |
T |
|
| Q |
249 |
atttacactgataattacccaaaatggcactgcacaaa |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
14542933 |
atttacactgataattacccaaaatggcactgcacaaa |
14542970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 55 - 286
Target Start/End: Complemental strand, 14580848 - 14580617
Alignment:
| Q |
55 |
caatagctatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttatcatgggatgtaattataga |
154 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14580848 |
caatagcaatggaaggttcagtacaaattaatgtacttgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattataga |
14580749 |
T |
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| Q |
155 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctttgatgcacaacaatcattcataagcatttac |
254 |
Q |
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| T |
14580748 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
14580649 |
T |
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| Q |
255 |
actgataattacccaaaatggcactgcacaaa |
286 |
Q |
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| T |
14580648 |
actgataattacccaaaatggcactgcacaaa |
14580617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 14542965 - 14543006
Alignment:
| Q |
299 |
cacaaattcaacatgcacttcatcttctgatatatgcaaact |
340 |
Q |
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| T |
14542965 |
cacaaattcaatatgcacttcatcctctgatatatgcaaact |
14543006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 35623177 - 35622991
Alignment:
| Q |
56 |
aatagctatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttatcatgggatgtaattatagaa |
155 |
Q |
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|||||| ||||||||| | || |||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |
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| T |
35623177 |
aatagcaatggaaggtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaa |
35623078 |
T |
|
| Q |
156 |
aaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctttgatgcacaacaatcattc |
242 |
Q |
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| T |
35623077 |
aaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattc |
35622991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 135 - 298
Target Start/End: Complemental strand, 34263991 - 34263828
Alignment:
| Q |
135 |
tcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctttgatgcacaac |
234 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||||||||||||||||||| |
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| T |
34263991 |
tcatgggatgaaataatagaaaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacaac |
34263892 |
T |
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| Q |
235 |
aatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaa |
298 |
Q |
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| T |
34263891 |
agtcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaa |
34263828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 35622810 - 35622746
Alignment:
| Q |
234 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaa |
298 |
Q |
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| T |
35622810 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaa |
35622746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 132 - 298
Target Start/End: Original strand, 37599764 - 37599930
Alignment:
| Q |
132 |
ttatcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctttgatgcac |
231 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||||||| || |||||||| || |||||||||||||||||| | || |||||||||||||||| |
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| T |
37599764 |
ttatcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctttgatgcac |
37599863 |
T |
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| Q |
232 |
aacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaa |
298 |
Q |
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|| | ||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |
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| T |
37599864 |
aagagtcatttataagcatttacactgataattacccaaaatggcattgcatagacacaaacacaaa |
37599930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 37605482 - 37605591
Alignment:
| Q |
222 |
tttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaacacaaattcaacatgcacttcat |
321 |
Q |
| |
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| T |
37605482 |
tttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatggcactgcacaaacac--------acacaaattcatcatgcactccat |
37605573 |
T |
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| Q |
322 |
cttctgatatatgcaaac |
339 |
Q |
| |
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| |||||||| ||||||| |
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| T |
37605574 |
cctctgatatttgcaaac |
37605591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 10403887 - 10403972
Alignment:
| Q |
199 |
ttcttgtagcagtagccatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcaca |
284 |
Q |
| |
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|||||||| || | || |||||||| || ||||||||||||||||||| |||||||| || ||||||||| |||||| |||||| |
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| T |
10403887 |
ttcttgtatcattcgcaatgttcttcgacgcacaacaatcattcataacaatttacaccgacgattacccaacatggcattgcaca |
10403972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 37599918 - 37599966
Alignment:
| Q |
292 |
acacaaacacaaattcaacatgcacttcatcttctgatatatgcaaact |
340 |
Q |
| |
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||||||||||||||||| |||| ||| |||| |||||||| |||||||| |
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| T |
37599918 |
acacaaacacaaattcatcatgtactccatcctctgatatttgcaaact |
37599966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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