View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_27 (Length: 352)
Name: NF5824_low_27
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 17461845 - 17461517
Alignment:
| Q |
17 |
aaatgagtaatatactaatatgcatttacaactccacctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaac |
116 |
Q |
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| T |
17461845 |
aaatgagtaatatactaatatgcatttacaactccacctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaac |
17461746 |
T |
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| Q |
117 |
aaaaaacatggatattagttgagtaagtcaatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttg |
216 |
Q |
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| T |
17461745 |
aaaaaacattgatattagttgagtaagtcaatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttg |
17461646 |
T |
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| Q |
217 |
accttggaaaggttttagctctgatctatttttctccttaacttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaag |
316 |
Q |
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| T |
17461645 |
accttggaaaggttttagctctgatctatttttctccttaacttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaag |
17461546 |
T |
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| Q |
317 |
aaagcatgcaatttatatgagaataatat |
345 |
Q |
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| T |
17461545 |
aaagcatgcaatttatatgagaagaatat |
17461517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 17455098 - 17455169
Alignment:
| Q |
54 |
ctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
125 |
Q |
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| T |
17455098 |
ctactcaaatctgtattcttagcactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacat |
17455169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 17455422 - 17455491
Alignment:
| Q |
260 |
tccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatt |
329 |
Q |
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| T |
17455422 |
tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaatt |
17455491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 17455171 - 17455214
Alignment:
| Q |
158 |
caagaacagcattgttgagctctccatcacttgaccttggtcat |
201 |
Q |
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| T |
17455171 |
caagaacagcattgttgaactctccatcacttgatcttggtcat |
17455214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 52143129 - 52143069
Alignment:
| Q |
136 |
tgagtaagtcaatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttg |
196 |
Q |
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| T |
52143129 |
tgagtaagtcaattagatctcccaagaacagcattgttgagctctccgttacttgaccttg |
52143069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 52143036 - 52142959
Alignment:
| Q |
259 |
ttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatga |
336 |
Q |
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| T |
52143036 |
ttccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatga |
52142959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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