View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_28 (Length: 323)
Name: NF5824_low_28
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 41874950 - 41874655
Alignment:
| Q |
11 |
cacagaaatataatggattcaaatgcaattatgcgtaagatgcatgctcatgagaactaaatgattcagacaaggtcaacccgccactaagacatcacac |
110 |
Q |
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| T |
41874950 |
cacaaaaatataatggattcaaatgcaattatgcgtaagatgcatgctcctgagaactaaatgatccagataaggtcaacccgccactaagacatcacac |
41874851 |
T |
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| Q |
111 |
ataatatttaacccgcagacacatgcatcacacaaaatatgcacatgtcatgtcataatgatgaaaagagatttgtccgccaataaggcatcacatagga |
210 |
Q |
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| T |
41874850 |
ataatatttaacccac---gacatgcatcacacaaaatatgcacatgtcatgccataatgatgaaaagagatttgtccgccaataaggcatcacatagga |
41874754 |
T |
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| Q |
211 |
aatgcatgatgatagtaaaaatataatttccgccacttaggcaaacacaatcaaataaaataaccggcacttaggaaaacaaagagaaaacccacatac |
309 |
Q |
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| T |
41874753 |
aatgcatgatgatagtaaaaatataatttctgccacttaggcaaccacaatcaaataaaataaccggcacttaggaaaacaaagagaaaactcacatac |
41874655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 9554727 - 9554964
Alignment:
| Q |
18 |
atataatggattcaaatgcaattatgcgtaagatgcatgctcatgagaactaaatgattcagacaaggtcaacccgccactaagacatcacacataatat |
117 |
Q |
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| T |
9554727 |
atataatggatttaaatgcaattatgtataagatgcatgttcctgataactaaatgatctggatatagtcatcccgccactaaagcatcgcacataatat |
9554826 |
T |
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| Q |
118 |
ttaacccgcagacacatgcatcacacaaaatatgcacatgtcatgtcataatgatgaaaagagatttgtccgccaataaggcatcacataggaaatgcat |
217 |
Q |
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| T |
9554827 |
ttaacccgc-cacacatgcatcacacacaatatacacatgtcatg-catgatgatgaaaagaaatttacccgtcacaaagacatcgcatagaaaatgcat |
9554924 |
T |
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| Q |
218 |
gatgatagtaaaaatataatttccgccacttaggcaaacac |
258 |
Q |
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| T |
9554925 |
aatgataat-aaaacataattcccaccacttagggaaacac |
9554964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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