View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_29 (Length: 318)
Name: NF5824_low_29
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_29 |
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| [»] scaffold0830 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 5079302 - 5079599
Alignment:
| Q |
6 |
agtgagatgaatgaagtagagaataacagttccatgcaatatgggattgaaaaatattttgtattacatatagattcaaaaattattgggaatatacaga |
105 |
Q |
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| T |
5079302 |
agtgaaatgaatgacgtagagaataacagttccatacaatatgggattgaaaaatattttgtattacatatagattcaaaaattattgggaatatacaga |
5079401 |
T |
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| Q |
106 |
aacaaagagagtcttcaaagtataaggtaatgtgagatttataaatcactatatacttttatttcttgannnnnnnnnccctcattgagtgaataaggtc |
205 |
Q |
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| T |
5079402 |
aacaaagagagtcttcaaagtataaggtaatgtgagatttataaatcactatatacttttatttctagatttttttttccctcattgagtgaataaggtc |
5079501 |
T |
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| Q |
206 |
ttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaatagaagatac |
303 |
Q |
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| T |
5079502 |
ttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaatagaggatac |
5079599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 5102750 - 5102690
Alignment:
| Q |
226 |
agttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaa |
286 |
Q |
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| T |
5102750 |
agttacatctgtcatattaatccgagcctcaggtgaatcttcacaacatctcaatgctaaa |
5102690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 5120400 - 5120315
Alignment:
| Q |
201 |
aggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaa |
286 |
Q |
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| T |
5120400 |
aggtcttgatcttgattaacgaggtagttgcatctgtcatattaatccgagcctcaggtgaatcttcacagcatctcaatgctaaa |
5120315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 16887063 - 16886955
Alignment:
| Q |
195 |
tgaataaggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaat |
294 |
Q |
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| T |
16887063 |
tgaataagatcttgattttgattagtgatgcagttacatctgccatactaatccttgcttctggtgaatctgcacaacatctcaatgctaaatccaaaac |
16886964 |
T |
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| Q |
295 |
agaagatac |
303 |
Q |
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| T |
16886963 |
agatgatac |
16886955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 25474944 - 25475011
Alignment:
| Q |
230 |
acatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaataga |
297 |
Q |
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| T |
25474944 |
acatctgccatattaattcttgctttaggtaaatcttcacaacaactgagggctaaaccaaaaataga |
25475011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 4927 - 4833
Alignment:
| Q |
203 |
gtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaataga |
297 |
Q |
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| T |
4927 |
gtcttgatttttattagcgacgcaataacatctgtcatattaattcttgcttccggtgaatattcgcaacaattcaaagctaaaccaaaaataga |
4833 |
T |
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