View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_low_36 (Length: 273)
Name: NF5824_low_36
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 13213479 - 13213349
Alignment:
| Q |
17 |
accaatcaacatggtgcttgaaatttgtggtgggttttttcaaaaagtttccattttttgttgaaggttaagtgctaagtagtagagagtagagaacatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13213479 |
accaatcaacatggtgcttgaaatttgtggtgggttttttcaaaaagtttccattttttgttgaaggttaagtgctaagtagtagagagtagagaacatg |
13213380 |
T |
|
| Q |
117 |
ccatcaacaacacctagctagttcttcaact |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13213379 |
ccatcaacaacacctagctagttcttcaact |
13213349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 13213284 - 13213235
Alignment:
| Q |
213 |
tctccaccaccacaacctagatcctttcctatctctctactttccttctt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13213284 |
tctccaccaccacaacctagatcctttcctatctctctcctttccttctt |
13213235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University